RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 CLIC5Q9NZA1 410 aa12.79□□□□□ -0.36
SF3B3-208ENST00000567250 AIPL1Q9NZN9 384 aa12.79□□□□□ -0.36
SF3B3-208ENST00000567250 NAGPAQ9UK23 515 aa12.79□□□□□ -0.36
SF3B3-208ENST00000567250 CAPN11Q9UMQ6 739 aa12.79□□□□□ -0.36
SF3B3-208ENST00000567250 SORCS3Q9UPU3 1222 aa12.79□□□□□ -0.36
SF3B3-208ENST00000567250 NUMBLQ9Y6R0 609 aa12.79□□□□□ -0.36
SF3B3-208ENST00000567250 A0A1W2PQH9 124 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 C2orf78A6NCI8 922 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 E5RJQ4 531 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 TLR5O60602 858 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 OLFM2O95897 454 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 OAS1P00973 400 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 MMEP08473 750 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 HDCP19113 662 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 PRKCIP41743 596 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 RPL34P49207 117 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 DAOAP59103 153 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 YWHAGP61981 247 aaKnown RBP eCLIP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 KLHL30Q0D2K2 578 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 TDRD12Q587J7 1177 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 FAM78AQ5JUQ0 283 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 BTBD8Q5XKL5 378 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 TOGARAM2Q6ZUX3 1019 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 RSRC2Q7L4I2 434 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 RNF135Q8IUD6 432 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 ZDHHC17Q8IUH5 632 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 ARID3BQ8IVW6 561 aaPredicted RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 CELF5Q8N6W0 485 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 FGF14Q92915 247 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 PPP1R13BQ96KQ4 1090 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 SLC4A5Q9BY07 1137 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 SLC46A2Q9BY10 475 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 KCNK12Q9HB15 430 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 OLA1Q9NTK5 396 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 TDP1Q9NUW8 608 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 SEPT11Q9NVA2 429 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 LIMD1Q9UGP4 676 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 BZW2Q9Y6E2 419 aaKnown RBP12.78□□□□□ -0.36
SF3B3-208ENST00000567250 BDP1A6H8Y1 2624 aa12.78□□□□□ -0.36
SF3B3-208ENST00000567250 NRG2O14511 850 aaPredicted RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 CFHP08603 1231 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 MBL2P11226 248 aaPredicted RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 RARGP13631 454 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 TCF3P15923 654 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 FCARP24071 287 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 CASP14P31944 242 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ATP5C1P36542 298 aaKnown RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 NSFP46459 744 aaKnown RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 NOMO3P69849 1222 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 SLC7A9P82251 487 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 FMO1Q01740 532 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 TDGQ13569 410 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 TSR1Q2NL82 804 aaKnown RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 KLHDC10Q6PID8 442 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 PARM1Q6UWI2 310 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 TMEM110Q86TL2 294 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 CNGA4Q8IV77 575 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 YAF2Q8IY57 180 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ZNF276Q8N554 614 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ARL14EPQ8N8R7 260 aaPredicted RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 SLC20A1Q8WUM9 679 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 FAM149B1Q96BN6 582 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ZSWIM3Q96MP5 696 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 NECAB3Q96P71 396 aaPredicted RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 CPXM1Q96SM3 734 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 AGPAT1Q99943 283 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 KXD1Q9BQD3 176 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ABCC13Q9NSE7 274 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ZNHIT6Q9NWK9 470 aaKnown RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 THG1LQ9NWX6 298 aaKnown RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 CHORDC1Q9UHD1 332 aaPredicted RBP12.77□□□□□ -0.37
SF3B3-208ENST00000567250 STRIP2Q9ULQ0 834 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 ARHGAP26Q9UNA1 814 aa12.77□□□□□ -0.37
SF3B3-208ENST00000567250 TICRRQ7Z2Z1 1910 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 NCOR1O75376 2440 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 PIK3R2O00459 728 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 COCHO43405 550 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 PRAMEF12O95522 483 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 LTFP02788 710 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 CYP1A1P04798 512 aaPredicted RBP12.76□□□□□ -0.37
SF3B3-208ENST00000567250 ASGR2P07307 311 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 GLI1P08151 1106 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 PSMC3P17980 439 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 ZNF75DP51815 510 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 PFKPQ01813 784 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 CENPCQ03188 943 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 USP4Q13107 963 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 PTPN20Q4JDL3 420 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 C10orf120Q5SQS8 335 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 NAA35Q5VZE5 725 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 CC2D1AQ6P1N0 951 aaPredicted RBP12.76□□□□□ -0.37
SF3B3-208ENST00000567250 TMC6Q7Z403 805 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 ERICH1Q86X53 443 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 GPIHBP1Q8IV16 184 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 UBALD2Q8IYN6 164 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 KIAA1958Q8N8K9 716 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 BPIFB1Q8TDL5 484 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 RNF139Q8WU17 664 aa12.76□□□□□ -0.37
SF3B3-208ENST00000567250 CPLX3Q8WVH0 158 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms