RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 EOGTQ5NDL2 527 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 TRMT11Q7Z4G4 463 aaKnown RBP15.77■□□□□ 0.12
CLN3-222ENST00000566083 TADA2BQ86TJ2 420 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 SCAMP5Q8TAC9 235 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 SLC2A14Q8TDB8 520 aa15.77■□□□□ 0.12
CLN3-222ENST00000566083 HNRNPABQ99729 332 aaKnown RBP15.77■□□□□ 0.12
CLN3-222ENST00000566083 POLMQ9NP87 494 aaPredicted RBP15.77■□□□□ 0.12
CLN3-222ENST00000566083 STX10O60499 249 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 MPLP40238 635 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 ASPAP45381 313 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 PSEN1P49768 467 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 NDUFA8P51970 172 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 DPYDQ12882 1025 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 ADAM9Q13443 819 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 GAB4Q2WGN9 574 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 PLA2G2CQ5R387 149 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 KRBA2Q6ZNG9 492 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 RASSF3Q86WH2 238 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 FAM186BQ8IYM0 893 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 GTPBP4Q9BZE4 634 aaKnown RBP15.77■□□□□ 0.11
CLN3-222ENST00000566083 SDCBP2Q9H190 292 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 ARHGEF4Q9NR80 690 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 PCDHA5Q9Y5H7 936 aa15.77■□□□□ 0.11
CLN3-222ENST00000566083 MYH10P35580 1976 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 DNAH14Q0VDD8 3507 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 HOXC11O43248 304 aaPredicted RBP15.76■□□□□ 0.11
CLN3-222ENST00000566083 TLR5O60602 858 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 GBP1P32455 592 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 ATP5C1P36542 298 aaKnown RBP15.76■□□□□ 0.11
CLN3-222ENST00000566083 SEC13P55735 322 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 MAP3K7CLP57077 242 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 EDRF1Q3B7T1 1238 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 LY6G5CQ5SRR4 150 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 KLHDC10Q6PID8 442 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 CYFIP2Q96F07 1278 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 ZFRQ96KR1 1074 aaKnown RBP15.76■□□□□ 0.11
CLN3-222ENST00000566083 CDK5RAP1Q96SZ6 601 aaKnown RBP15.76■□□□□ 0.11
CLN3-222ENST00000566083 SMOQ99835 787 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 NIF3L1Q9GZT8 377 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 DUSP15Q9H1R2 295 aaPredicted RBP15.76■□□□□ 0.11
CLN3-222ENST00000566083 TMEM8AQ9HCN3 771 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 CYLDQ9NQC7 956 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 GMIPQ9P107 970 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 DEC1Q9P2X7 70 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 LSM7Q9UK45 103 aaKnown RBP15.76■□□□□ 0.11
CLN3-222ENST00000566083 SCML2Q9UQR0 700 aa15.76■□□□□ 0.11
CLN3-222ENST00000566083 MYO18AQ92614 2054 aaKnown RBP15.75■□□□□ 0.11
CLN3-222ENST00000566083 ZNF202O95125 648 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 ADRB1P08588 477 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 CCDC130P13994 396 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 HOXC13P31276 330 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 DPP6P42658 865 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 MCCD1P59942 119 aaPredicted RBP15.75■□□□□ 0.11
CLN3-222ENST00000566083 PPM1JQ5JR12 505 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 KRT39Q6A163 491 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 ANO7Q6IWH7 933 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 HTR3DQ70Z44 454 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 ZMIZ2Q8NF64 920 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 WHAMMQ8TF30 809 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 SPACA7Q96KW9 195 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 CCSER2Q9H7U1 834 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.75■□□□□ 0.116e-9■■■■■ 134.6
CLN3-222ENST00000566083 SPHK2Q9NRA0 654 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 FAM49BQ9NUQ9 324 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 RMND1Q9NWS8 449 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 CACNA1BQ00975 2339 aa15.75■□□□□ 0.11
CLN3-222ENST00000566083 ABCA7Q8IZY2 2146 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 MYOFQ9NZM1 2061 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 BCLAF3A2AJT9 711 aaKnown RBP15.74■□□□□ 0.11
CLN3-222ENST00000566083 TBC1D3BA6NDS4 549 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 ZBTB24O43167 697 aaPredicted RBP15.74■□□□□ 0.11
CLN3-222ENST00000566083 GDF9O60383 454 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 CAVIN2O95810 425 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 ADORA2BP29275 332 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 SLC6A11P48066 632 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 GCLMP48507 274 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 CREB5Q02930 508 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 C1orf220Q5T0J3 134 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 CLEC20AQ6ZU45 233 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 ZNF276Q8N554 614 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 C12orf29Q8N999 325 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 IL17RCQ8NAC3 791 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 XPO6Q96QU8 1125 aaKnown RBP15.74■□□□□ 0.11
CLN3-222ENST00000566083 POLR3BQ9NW08 1133 aaPredicted RBP15.74■□□□□ 0.11
CLN3-222ENST00000566083 WDR35Q9P2L0 1181 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 ZDHHC9Q9Y397 364 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 GON4LQ3T8J9 2241 aa15.74■□□□□ 0.11
CLN3-222ENST00000566083 EPG5Q9HCE0 2579 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 CETN3O15182 167 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 CILPO75339 1184 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 BEST1O76090 585 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 KLF8O95600 359 aaPredicted RBP15.73■□□□□ 0.11
CLN3-222ENST00000566083 EPB41P11171 864 aaKnown RBP15.73■□□□□ 0.11
CLN3-222ENST00000566083 KIR2DL1P43626 348 aaPredicted RBP15.73■□□□□ 0.11
CLN3-222ENST00000566083 PLA2G4AP47712 749 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 SLC8A3P57103 927 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 SF3A2Q15428 464 aaKnown RBP15.73■□□□□ 0.11
CLN3-222ENST00000566083 ANO4Q32M45 955 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 SPDYCQ5MJ68 293 aa15.73■□□□□ 0.11
CLN3-222ENST00000566083 PMS2CLQ68D20 193 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms