RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 MAPK8IP1Q9UQF2 711 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 SCML2Q9UQR0 700 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 ATG2BQ96BY7 2078 aa18.21■□□□□ 0.51
VPS9D1-203ENST00000563798 EML5Q05BV3 1969 aa18.21■□□□□ 0.5
VPS9D1-203ENST00000563798 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 HOXC11O43248 304 aaPredicted RBP18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 GREM1O60565 184 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 CILPO75339 1184 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 KAT7O95251 611 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 FAM200BP0CF97 657 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 TRIM49P0CI25 452 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 TRIM49CP0CI26 452 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 ADH5P11766 374 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 GRIA2P42262 883 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 TNFRSF4P43489 277 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 SLC6A11P48066 632 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 MAP3K7CLP57077 242 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 GAD2Q05329 585 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 ORC1Q13415 861 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 CRY1Q16526 586 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 COBLL1Q53SF7 1204 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 HTR3DQ70Z44 454 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 C11orf74Q86VG3 221 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 ETFBKMTQ8IXQ9 262 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 PHTF2Q8N3S3 785 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 ZNF276Q8N554 614 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 TSTD1Q8NFU3 115 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 CYFIP2Q96F07 1278 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 CCDC34Q96HJ3 373 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 DUSP15Q9H1R2 295 aaPredicted RBP18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 ARRDC1-AS1Q9H2J1 176 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 TLR8Q9NR97 1041 aaKnown RBP18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 FAM49BQ9NUQ9 324 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 PCDHA5Q9Y5H7 936 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 NCOR2Q9Y618 2525 aa18.2■□□□□ 0.5
VPS9D1-203ENST00000563798 TLR5O60602 858 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 APODP05090 189 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 KIR2DL1P43626 348 aaPredicted RBP18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 PGFP49763 221 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 DGKEP52429 567 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 MESP2Q0VG99 397 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 C2orf27AQ580R0 203 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 LY6G5CQ5SRR4 150 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 KRT39Q6A163 491 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 KLHDC10Q6PID8 442 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 C12orf40Q86WS4 652 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 TTC39CQ8N584 583 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 KCNV2Q8TDN2 545 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 CNOT6LQ96LI5 555 aaKnown RBP18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 SH3BP1Q9Y3L3 701 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 SPAG17Q6Q759 2223 aa18.19■□□□□ 0.5
VPS9D1-203ENST00000563798 DCDC2BA2VCK2 349 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 ANTXRLA6NF34 631 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 SCAMP3O14828 347 aaKnown RBP18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 RHOBTB1O94844 696 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 PREPLQ4J6C6 727 aaPredicted RBP18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 GPRIN1Q7Z2K8 1008 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 BBS7Q8IWZ6 715 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 FMR1NBQ8N0W7 255 aaPredicted RBP18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 IL17RCQ8NAC3 791 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 CCDC150Q8NCX0 1101 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 KLF16Q9BXK1 252 aaPredicted RBP18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 DNAI2Q9GZS0 605 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 ARHGEF4Q9NR80 690 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 SPHK2Q9NRA0 654 aa18.18■□□□□ 0.5
VPS9D1-203ENST00000563798 RALGAPA1Q6GYQ0 2036 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 GDF9O60383 454 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 STX10O60499 249 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 ADORA2BP29275 332 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 KIF11P52732 1056 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 SEC13P55735 322 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 ELF2Q15723 593 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 USP39Q53GS9 565 aaKnown RBP18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 SFTPA1Q8IWL2 248 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 ZC3H3Q8IXZ2 948 aaKnown RBP18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 OLIG1Q8TAK6 271 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 SPATA20Q8TB22 786 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 WBP2Q969T9 261 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 GSDMAQ96QA5 445 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 DUSP16Q9BY84 665 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 GDPD2Q9HCC8 539 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 VPS45Q9NRW7 570 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 RMND1Q9NWS8 449 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 OSER1Q9NX31 292 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 USP3Q9Y6I4 520 aa18.17■□□□□ 0.5
VPS9D1-203ENST00000563798 TM4SF5O14894 197 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 CETN3O15182 167 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 TULP3O75386 442 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 HNRNPLP14866 589 aaKnown RBP eCLIP18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 ATP5C1P36542 298 aaKnown RBP18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 MPLP40238 635 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 PSEN1P49768 467 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 EOGTQ5NDL2 527 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 BTBD8Q5XKL5 378 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 TMEM92Q6UXU6 159 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 CCDC186Q7Z3E2 898 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 TMEM25Q86YD3 366 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 CCDC33Q8N5R6 958 aa18.16■□□□□ 0.5
VPS9D1-203ENST00000563798 ALLCQ8N6M5 410 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 127.1 ms