RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 DACH2Q96NX9 599 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 RTKNQ9BST9 563 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 WNT8AQ9H1J5 351 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CHST8Q9H2A9 424 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 PDCL3Q9H2J4 239 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CNNM1Q9NRU3 951 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 TBCCD1Q9NVR7 557 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 DSEQ9UL01 958 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 PIK3C2AO00443 1686 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 CAMTA1Q9Y6Y1 1673 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 NFAT5O94916 1531 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 NRKQ7Z2Y5 1582 aa5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 MAP2P11137 1827 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 PHRF1Q9P1Y6 1649 aaKnown RBP5.6□□□□□ -1.51
VPS35P1-201ENST00000563400 UBA6A0AVT1 1052 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 DDX39AO00148 427 aaKnown RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 BTN3A1O00481 513 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 BUB1BO60566 1050 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 KERAO60938 352 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 APBB3O95704 486 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 F9P00740 461 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 RPLP2P05387 115 aaKnown RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 NPPBP16860 134 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 TM4SF1P30408 202 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 GCH1P30793 250 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 SDHAP31040 664 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ASPAP45381 313 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ZNF41P51814 821 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 RPS3AP61247 264 aaKnown RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ACTN3Q08043 901 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ADCY2Q08462 1091 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 SCAPQ12770 1279 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 TARDBPQ13148 414 aaKnown RBP eCLIP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 NAA25Q14CX7 972 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 RAP1GAP2Q684P5 730 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 CCBE1Q6UXH8 406 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ANKS1BQ7Z6G8 1248 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 GLRX5Q86SX6 157 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 NBPF5PQ86XG9 351 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 DCBLD1Q8N8Z6 715 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ARRDC4Q8NCT1 418 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 C2CD4AQ8NCU7 369 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 CCDC150Q8NCX0 1101 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 SHKBP1Q8TBC3 707 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 FBLIM1Q8WUP2 373 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 CFHR4Q92496 578 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 STAMQ92783 540 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 TCTN2Q96GX1 697 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 MAML3Q96JK9 1138 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 FAM167AQ96KS9 214 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 MRGPRX4Q96LA9 322 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 UIMC1Q96RL1 719 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 OPA3Q9H6K4 179 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 GREM2Q9H772 168 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 IL21RQ9HBE5 538 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 AKAP7Q9P0M2 348 aaPredicted RBP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 DNAJB9Q9UBS3 223 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 DAPP1Q9UN19 280 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 DNAJC16Q9Y2G8 782 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 LRP6O75581 1613 aa5.59□□□□□ -1.51
VPS35P1-201ENST00000563400 ANKRD26Q9UPS8 1709 aa5.59□□□□□ -1.52
VPS35P1-201ENST00000563400 A0A1W2PQ09 198 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KRT87PA6NCN2 255 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 A8MV72 311 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TMEM233B4DJY2 109 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 H0YAE9 185 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 STX16-NPEPL1H3BU86 382 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TAF4O00268 1085 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 STX16O14662 325 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 NDC80O14777 642 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 FOXP2O15409 715 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PIAS2O75928 621 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 C4BPAP04003 597 aaKnown RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 CNPP09543 421 aaKnown RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KRT13P13646 458 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SSTR4P31391 388 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PRPHP41219 470 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 HARS2P49590 506 aaKnown RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 BCAT1P54687 386 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KIAA2012Q0VF49 1180 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MGAT2Q10469 447 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MRPL28Q13084 256 aaKnown RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC13A2Q13183 592 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TDGQ13569 410 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 AOC3Q16853 763 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PRAMEF9Q5VWM5 478 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KDELC1Q6UW63 502 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 GAREM2Q75VX8 874 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZDHHC13Q8IUH4 622 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 GPR150Q8NGU9 434 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 OR6B3Q8NGW1 331 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KBTBD7Q8WVZ9 684 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PPP1R13BQ96KQ4 1090 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SNX27Q96L92 541 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 Q96M66 194 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 AK8Q96MA6 479 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 OSBPL1AQ9BXW6 950 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 HDAC8Q9BY41 377 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC25A18Q9H1K4 315 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms