RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 SLC30A5Q8TAD4 765 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 CPA5Q8WXQ8 436 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 MRFAP1L1Q96HT8 127 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 ASB16Q96NS5 453 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 AGPAT1Q99943 283 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 NUP58Q9BVL2 599 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 EDEM3Q9BZQ6 932 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 MIS12Q9H081 205 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 LHX5Q9H2C1 402 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 HAUS4Q9H6D7 363 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 TRPC7Q9HCX4 862 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 ST7Q9NRC1 585 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 EPS15L1Q9UBC2 864 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 LIMD1Q9UGP4 676 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 MYO6Q9UM54 1294 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 TECTAO75443 2155 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 KMT2EQ8IZD2 1858 aa10.3□□□□□ -0.76
CLK3-208ENST00000562626 NYNRINQ9P2P1 1898 aaKnown RBP10.3□□□□□ -0.76
CLK3-208ENST00000562626 ANHXE9PGG2 379 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 DDX3XO00571 662 aaKnown RBP eCLIP10.29□□□□□ -0.76
CLK3-208ENST00000562626 ZNF197O14709 1029 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 SCAMP3O14828 347 aaKnown RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 COCHO43405 550 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 MFAP3LO75121 409 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 GJB6O95452 261 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ADCY5O95622 1261 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 OLFM2O95897 454 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ZBED1O96006 694 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ABL1P00519 1130 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 KRT9P35527 623 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 BPIFB4P59827 614 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ZBED6P86452 979 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ARID5BQ14865 1188 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 MEA1Q16626 185 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 CLEC16AQ2KHT3 1053 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 SNX30Q5VWJ9 437 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 SMYD5Q6GMV2 418 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 OTOP3Q7RTS5 596 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 PHLDB2Q86SQ0 1253 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 TMEM110Q86TL2 294 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 MON1AQ86VX9 555 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ARID3BQ8IVW6 561 aaPredicted RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 TC2NQ8N9U0 490 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ZSCAN18Q8TBC5 510 aaPredicted RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 USP13Q92995 863 aaPredicted RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 PPP1R13BQ96KQ4 1090 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ZFRQ96KR1 1074 aaKnown RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 ADAM33Q9BZ11 813 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 DNAI2Q9GZS0 605 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 TASP1Q9H6P5 420 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 LRRC4Q9HBW1 653 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 COMMD8Q9NX08 183 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 TRPM5Q9NZQ8 1165 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 ARHGAP20Q9P2F6 1191 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 UXTQ9UBK9 157 aaPredicted RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 PRKAG3Q9UGI9 489 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 USTQ9Y2C2 406 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 LUC7L2Q9Y383 392 aaKnown RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 NUMBLQ9Y6R0 609 aa10.29□□□□□ -0.76
CLK3-208ENST00000562626 MYO18AQ92614 2054 aaKnown RBP10.29□□□□□ -0.76
CLK3-208ENST00000562626 NARSO43776 548 aaKnown RBP10.28□□□□□ -0.76
CLK3-208ENST00000562626 TPM3P06753 285 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 RARGP13631 454 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 HNRNPH3P31942 346 aaKnown RBP10.28□□□□□ -0.76
CLK3-208ENST00000562626 PITX1P78337 314 aaPredicted RBP10.28□□□□□ -0.76
CLK3-208ENST00000562626 IER5LQ5T953 404 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 TRNP1Q6NT89 227 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 OLFML1Q6UWY5 402 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 VITQ6UXI7 678 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 MMS22LQ6ZRQ5 1243 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 ZNF677Q86XU0 584 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 ZDHHC14Q8IZN3 488 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 CMTM8Q8IZV2 173 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 STK32AQ8WU08 396 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 EDEM1Q92611 657 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 MRPS31Q92665 395 aaKnown RBP10.28□□□□□ -0.76
CLK3-208ENST00000562626 HSFY1Q96LI6 401 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 SLITRK1Q96PX8 696 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 DNAJC7Q99615 494 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 CHP1Q99653 195 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 FBXO44Q9H4M3 255 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 SLITRK6Q9H5Y7 841 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLK3-208ENST00000562626 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLK3-208ENST00000562626 GDE1Q9NZC3 331 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 NAGPAQ9UK23 515 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 NENFQ9UMX5 172 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 FAM50BQ9Y247 325 aa10.28□□□□□ -0.76
CLK3-208ENST00000562626 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.28□□□□□ -0.76
CLK3-208ENST00000562626 CHD5Q8TDI0 1954 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 TMCO5BA8MYB1 307 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 GRAP2O75791 330 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 FGF19O95750 216 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 MRE11P49959 708 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 YWHAGP61981 247 aaKnown RBP eCLIP10.27□□□□□ -0.77
CLK3-208ENST00000562626 CENPCQ03188 943 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 KLHL30Q0D2K2 578 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 GRM2Q14416 872 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 RAB6CQ53S08 254 aa10.27□□□□□ -0.77
CLK3-208ENST00000562626 OTUD1Q5VV17 481 aaPredicted RBP10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms