RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 AFF4Q9UHB7 1163 aaKnown RBP9.62□□□□□ -0.87
VPS39-205ENST00000562258 RBAK-RBAKDNI3L0D1 243 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 KCNK1O00180 336 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 C8AP07357 584 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 ZFXP17010 805 aaPredicted RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 GTF2F1P35269 517 aaKnown RBP eCLIP9.61□□□□□ -0.87
VPS39-205ENST00000562258 SCNN1BP51168 640 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 CBX2Q14781 532 aaPredicted RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 NAA30Q147X3 362 aaPredicted RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 BMT2Q1RMZ1 405 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 MIIPQ5JXC2 388 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 RARS2Q5T160 578 aaKnown RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.61□□□□□ -0.875e-15■■■■■ 70.4
VPS39-205ENST00000562258 NUP93Q8N1F7 819 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 ZDBF2Q9HCK1 2354 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 C3orf70A6NLC5 250 aaPredicted RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 A8MX80 341 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 PAEPP09466 180 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 RARGP13631 454 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 ATP1A2P50993 1020 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 FLCNQ8NFG4 579 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 KREMEN1Q96MU8 473 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 THG1LQ9NWX6 298 aaKnown RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 WBP1LQ9NX94 342 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 RNF14Q9UBS8 474 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 FIS1Q9Y3D6 152 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 RTN3O95197 1032 aaPredicted RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 ATG7O95352 703 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 CHRNA1P02708 482 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 AMPD1P23109 780 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 TCEA2Q15560 299 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 RABGAP1LQ5R372 815 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 RAP1GAP2Q684P5 730 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 CDKL3Q8IVW4 592 aaPredicted RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 ARFGAP2Q8N6H7 521 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 CSGALNACT1Q8TDX6 532 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 PFDN4Q9NQP4 134 aa9.61□□□□□ -0.87
VPS39-205ENST00000562258 POLR2AP24928 1970 aaKnown RBP9.61□□□□□ -0.87
VPS39-205ENST00000562258 CCDC188H7C350 402 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 HCRTO43612 131 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SYNCRIPO60506 623 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 KCTD19Q17RG1 926 aaPredicted RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 GPR158Q5T848 1215 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ITPRIPL1Q6GPH6 555 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 CENPUQ71F23 418 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 RNF135Q8IUD6 432 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 PPM1NQ8N819 430 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ANKRD52Q8NB46 1076 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 KREMEN2Q8NCW0 462 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 LRRC15Q8TF66 581 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 LRRN4Q8WUT4 740 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 RAPGEF5Q92565 580 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SYN2Q92777 582 aaPredicted RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 PDLIM2Q96JY6 352 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SNX27Q96L92 541 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 NUDCD1Q96RS6 583 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 TLK1Q9UKI8 766 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SIK3Q9Y2K2 1263 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 MAP3K13O43283 966 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 MSI1O43347 362 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 ZNF500O60304 480 aaPredicted RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 MSH2P43246 934 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 RPL7AP62424 266 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 SLC6A3Q01959 620 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ARHGEF7Q14155 803 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 HIC1Q14526 733 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ANKMY2Q8IV38 441 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 TPCN2Q8NHX9 752 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SHC3Q92529 594 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ARHGEF26Q96DR7 871 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 DNAJC7Q99615 494 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 POPDC2Q9HBU9 364 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 FAM114A2Q9NRY5 505 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 UXTQ9UBK9 157 aaPredicted RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 EXOC1LA0A1B0GW35 172 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 GRXCR1A8MXD5 290 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SEC31AO94979 1220 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 SLC11A1P49279 550 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 CSE1LP55060 971 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 TMPRSS15P98073 1019 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ATP13A4Q4VNC1 1196 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 FIGNQ5HY92 759 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SPATA4Q8NEY3 305 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 SPPL2BQ8TCT7 592 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 EXOC4Q96A65 974 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 PCED1BQ96HM7 432 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 TRIM51Q9BSJ1 452 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 RHOBTB2Q9BYZ6 727 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 GPR63Q9BZJ6 419 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 BRD9Q9H8M2 597 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 ATP13A1Q9HD20 1204 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 RIF1Q5UIP0 2472 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 UBR3Q6ZT12 1888 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 TCHHQ07283 1943 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 OR6C75A6NL08 312 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 KPNA3O00505 521 aaPredicted RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 TRIM66O15016 1216 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 C4BPAP04003 597 aaKnown RBP9.6□□□□□ -0.87
VPS39-205ENST00000562258 AKT1P31749 480 aa9.6□□□□□ -0.87
VPS39-205ENST00000562258 PDIA2Q13087 525 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms