RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 HNRNPLP14866 589 aaKnown RBP eCLIP20.14■□□□□ 0.81
VPS35-202ENST00000561713 DHPSP49366 369 aaPredicted RBP20.14■□□□□ 0.81
VPS35-202ENST00000561713 SLC5A3P53794 718 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 CLDN10P78369 228 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 CRY1Q16526 586 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 ZACNQ401N2 412 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 TMEM92Q6UXU6 159 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 SLC9A9Q8IVB4 645 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 FUKQ8N0W3 1084 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 JAKMIP2Q96AA8 810 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 SLITRK1Q96PX8 696 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 GMIPQ9P107 970 aa20.14■□□□□ 0.81
VPS35-202ENST00000561713 DMXL2Q8TDJ6 3036 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 PDXKO00764 312 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 AP1G2O75843 785 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 HLA-DRAP01903 254 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 CEACAM1P13688 526 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 YWHAQP27348 245 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 ASPAP45381 313 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 PDE6CP51160 858 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 NDST1P52848 882 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 SLC7A9P82251 487 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 MESP2Q0VG99 397 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 UAP1L1Q3KQV9 507 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 SV2AQ7L0J3 742 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 C12orf40Q86WS4 652 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 NUP93Q8N1F7 819 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 KDF1Q8NAX2 398 aaPredicted RBP20.13■□□□□ 0.81
VPS35-202ENST00000561713 RLN3Q8WXF3 142 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 PIGKQ92643 395 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 SMARCD1Q96GM5 515 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 CEP295NLQ96MC4 621 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 TMEM121BQ9BXQ6 578 aaPredicted RBP20.13■□□□□ 0.81
VPS35-202ENST00000561713 DMAP1Q9NPF5 467 aaPredicted RBP20.13■□□□□ 0.81
VPS35-202ENST00000561713 USP25Q9UHP3 1055 aa20.13■□□□□ 0.81
VPS35-202ENST00000561713 BEST1O76090 585 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 CSRP1P21291 193 aaKnown RBP20.12■□□□□ 0.81
VPS35-202ENST00000561713 NR2F2P24468 414 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 SLC6A11P48066 632 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 AP3M2P53677 418 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 KDSRQ06136 332 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 DPYDQ12882 1025 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 SMYD4Q8IYR2 804 aaPredicted RBP20.12■□□□□ 0.81
VPS35-202ENST00000561713 ADGRG2Q8IZP9 1017 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 ALLCQ8N6M5 410 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 FRMD1Q8N878 549 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 C12orf29Q8N999 325 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 ZMIZ2Q8NF64 920 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 OLIG1Q8TAK6 271 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 SLC2A14Q8TDB8 520 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 TWNKQ96RR1 684 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 ADAM33Q9BZ11 813 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 CCSER2Q9H7U1 834 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 EHD2Q9NZN4 543 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 CIZ1Q9ULV3 898 aaPredicted RBP20.12■□□□□ 0.81
VPS35-202ENST00000561713 GTF3C3Q9Y5Q9 886 aa20.12■□□□□ 0.81
VPS35-202ENST00000561713 COCHO43405 550 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 CALUO43852 315 aaPredicted RBP20.11■□□□□ 0.81
VPS35-202ENST00000561713 ASS1P00966 412 aaKnown RBP20.11■□□□□ 0.81
VPS35-202ENST00000561713 FAM163BP0C2L3 166 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 IRF1P10914 325 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 ADORA2BP29275 332 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 GCLMP48507 274 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 PGFP49763 221 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 KRBA2Q6ZNG9 492 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 GPRIN1Q7Z2K8 1008 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 TXNDC5Q8NBS9 432 aaKnown RBP20.11■□□□□ 0.81
VPS35-202ENST00000561713 DEFB124Q8NES8 71 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 TMC2Q8TDI7 906 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 WBP2Q969T9 261 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 TNIP3Q96KP6 325 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 ZFRQ96KR1 1074 aaKnown RBP20.11■□□□□ 0.81
VPS35-202ENST00000561713 SMOQ99835 787 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 SCNM1Q9BWG6 230 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 APOBEC3GQ9HC16 384 aaKnown RBP20.11■□□□□ 0.81
VPS35-202ENST00000561713 ZDHHC4Q9NPG8 344 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 CHORDC1Q9UHD1 332 aaPredicted RBP20.11■□□□□ 0.81
VPS35-202ENST00000561713 FRMD4BQ9Y2L6 1034 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 ZFYVE26Q68DK2 2539 aa20.11■□□□□ 0.81
VPS35-202ENST00000561713 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 FAM237AA0A1B0GTK4 181 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 SGK1O00141 431 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TNFRSF10BO14763 440 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 RHOBTB3O94955 611 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 RTN3O95197 1032 aaPredicted RBP20.1■□□□□ 0.81
VPS35-202ENST00000561713 KLF8O95600 359 aaPredicted RBP20.1■□□□□ 0.81
VPS35-202ENST00000561713 CHRM1P11229 460 aaPredicted RBP20.1■□□□□ 0.81
VPS35-202ENST00000561713 PFKLP17858 780 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TIE1P35590 1138 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 VAMP7P51809 220 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 MAP3K7CLP57077 242 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 MRPS21P82921 87 aaKnown RBP20.1■□□□□ 0.81
VPS35-202ENST00000561713 PPP3CAQ08209 521 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 DHCR24Q15392 516 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TRIM61Q5EBN2 209 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 EMC10Q5UCC4 262 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 ARMCX6Q7L4S7 300 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TMEFF1Q8IYR6 380 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 IL17RCQ8NAC3 791 aa20.1■□□□□ 0.81
VPS35-202ENST00000561713 TAS1R2Q8TE23 839 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms