RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PARD3BQ8TEW8 1205 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 FBXO32Q969P5 355 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 WBP2Q969T9 261 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 CCDC127Q96BQ5 260 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 SPACA7Q96KW9 195 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 CAPN10Q9HC96 672 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 SPHK2Q9NRA0 654 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 DMAC2Q9NW81 257 aa17.43■□□□□ 0.38
CLN3-208ENST00000561505 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 A0A1W2PQF6 199 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 FAM221BA6H8Z2 402 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 TULP1O00294 542 aaPredicted RBP17.42■□□□□ 0.38
CLN3-208ENST00000561505 STX6O43752 255 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 CUTAO60888 179 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 YEATS4O95619 227 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 SLC5A3P53794 718 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 CDH8P55286 799 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 TRPC3Q13507 836 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 KNOP1Q1ED39 458 aaKnown RBP17.42■□□□□ 0.38
CLN3-208ENST00000561505 TRMT11Q7Z4G4 463 aaKnown RBP17.42■□□□□ 0.38
CLN3-208ENST00000561505 TMEM25Q86YD3 366 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 SLC9A9Q8IVB4 645 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 BBS7Q8IWZ6 715 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 TMEFF1Q8IYR6 380 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 TERB1Q8NA31 727 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 NUSAP1Q9BXS6 441 aaKnown RBP17.42■□□□□ 0.38
CLN3-208ENST00000561505 ADAM33Q9BZ11 813 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 SDCBP2Q9H190 292 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 CCSER2Q9H7U1 834 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 DMAP1Q9NPF5 467 aaPredicted RBP17.42■□□□□ 0.38
CLN3-208ENST00000561505 MARK1Q9P0L2 795 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 DEC1Q9P2X7 70 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 ZMIZ1Q9ULJ6 1067 aa17.42■□□□□ 0.38
CLN3-208ENST00000561505 MYO18AQ92614 2054 aaKnown RBP17.42■□□□□ 0.38
CLN3-208ENST00000561505 SPEGQ15772 3267 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 SCAMP3O14828 347 aaKnown RBP17.41■□□□□ 0.38
CLN3-208ENST00000561505 VNN1O95497 513 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 TOP3BO95985 862 aaKnown RBP17.41■□□□□ 0.38
CLN3-208ENST00000561505 ABL1P00519 1130 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 ENGP17813 658 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 GABRG2P18507 467 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 PGFP49763 221 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 CYP2J2P51589 502 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 STK38Q15208 465 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 LYSMD4Q5XG99 296 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 CEP76Q8TAP6 659 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 DHX58Q96C10 678 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 SMARCD1Q96GM5 515 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 TNIP3Q96KP6 325 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 SMOQ99835 787 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 SCNM1Q9BWG6 230 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 KLF16Q9BXK1 252 aaPredicted RBP17.41■□□□□ 0.38
CLN3-208ENST00000561505 SMYD3Q9H7B4 428 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 NXF1Q9UBU9 619 aaKnown RBP17.41■□□□□ 0.38
CLN3-208ENST00000561505 ATP8B3O60423 1300 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 PI4KAP42356 2102 aa17.41■□□□□ 0.38
CLN3-208ENST00000561505 TCRBV21S2A2A0A5A6 115 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 TBC1D3BA6NDS4 549 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 CACNG3O60359 315 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 NTSR1P30989 418 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 KDSRQ06136 332 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 FOXC1Q12948 553 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 DUOXA1Q1HG43 343 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 SLC36A4Q6YBV0 504 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 MIB1Q86YT6 1006 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 ZNF276Q8N554 614 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 ZNF513Q8N8E2 541 aaPredicted RBP17.4■□□□□ 0.38
CLN3-208ENST00000561505 DEFB124Q8NES8 71 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 HMGB4Q8WW32 186 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 GABRG3Q99928 467 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 CYLDQ9NQC7 956 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 FBXO10Q9UK96 956 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 SLC6A14Q9UN76 642 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 SH3BP1Q9Y3L3 701 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 NEUROG3Q9Y4Z2 214 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 PCDH15Q96QU1 1955 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 GON4LQ3T8J9 2241 aa17.4■□□□□ 0.38
CLN3-208ENST00000561505 LRRIQ3A6PVS8 624 aaPredicted RBP17.39■□□□□ 0.37
CLN3-208ENST00000561505 MAP3K13O43283 966 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 AP5Z1O43299 807 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 BEST1O76090 585 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 CAPNS1P04632 268 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 SERPINF2P08697 491 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 ITPKAP23677 461 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 CASP4P49662 377 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 MCCD1P59942 119 aaPredicted RBP17.39■□□□□ 0.37
CLN3-208ENST00000561505 NCOA4Q13772 614 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 ZACNQ401N2 412 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 ZNF667Q5HYK9 610 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 BTBD8Q5XKL5 378 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 KLHDC10Q6PID8 442 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 NUDT18Q6ZVK8 323 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 UNC93AQ86WB7 457 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 NELFCDQ8IXH7 590 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 GOLGA5Q8TBA6 731 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 TAF4BQ92750 862 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 ZNF396Q96N95 335 aaPredicted RBP17.39■□□□□ 0.37
CLN3-208ENST00000561505 FBXO44Q9H4M3 255 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 ZDHHC4Q9NPG8 344 aa17.39■□□□□ 0.37
CLN3-208ENST00000561505 GMIPQ9P107 970 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms