RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 APRTP07741 180 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 GALTP07902 379 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 KRT7P08729 469 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RBP3P10745 1247 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PYGBP11216 843 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 LAG3P18627 525 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 AMPD1P23109 780 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 NRIP1P48552 1158 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 EIF3EP60228 445 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SMAD3P84022 425 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 GPS1Q13098 491 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SH3PXD2AQ5TCZ1 1133 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RAP1GAP2Q684P5 730 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 HEATR6Q6AI08 1181 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PSRC1Q6PGN9 363 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 DENND1CQ8IV53 801 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 LRRC52Q8N7C0 313 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 ATP11CQ8NB49 1132 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SLC4A11Q8NBS3 891 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 C3orf58Q8NDZ4 430 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 KLHDC9Q8NEP7 349 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TPCN2Q8NHX9 752 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PPP1R14CQ8TAE6 165 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 GDPD5Q8WTR4 605 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 LRRC45Q96CN5 670 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RMDN1Q96DB5 314 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CFAP36Q96G28 342 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 EXOC2Q96KP1 924 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SMYD2Q9NRG4 433 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 GMIPQ9P107 970 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 FBXL5Q9UKA1 691 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 NFU1Q9UMS0 254 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 STXBP5LQ9Y2K9 1186 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TRPM7Q96QT4 1865 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 MYH7BA7E2Y1 1941 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 H3BQ06 376 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CILPO75339 1184 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PMPCBO75439 489 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TJP3O95049 919 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CYBBP04839 570 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 RPL9P32969 192 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 WASP42768 502 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 ACADSBP45954 432 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SLC5A3P53794 718 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 IRX4P78413 519 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 DR1Q01658 176 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 GHRHRQ02643 423 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 MMRN1Q13201 1228 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CLLU1OSQ5K130 101 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 KCTD16Q68DU8 428 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TMEM173Q86WV6 379 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 REXO1L1PQ8IX06 675 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PARP9Q8IXQ6 854 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 IFT20Q8IY31 132 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 DCLK2Q8N568 766 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SLC25A41Q8N5S1 370 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 FLCNQ8NFG4 579 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 MORC4Q8TE76 937 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 CYP2S1Q96SQ9 504 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 NCAPGQ9BPX3 1015 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 IQCGQ9H095 443 aaKnown RBP5.68□□□□□ -1.5
VPS13C-209ENST00000560637 TKTL2Q9H0I9 626 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PDLIM7Q9NR12 457 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 GKN1Q9NS71 199 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 AIPL1Q9NZN9 384 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 MPP6Q9NZW5 540 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 WDR35Q9P2L0 1181 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 HPCAL4Q9UM19 191 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 USP18Q9UMW8 372 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 AP4E1Q9UPM8 1137 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 PHF24Q9UPV7 400 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 SSUH2Q9Y2M2 353 aa5.68□□□□□ -1.5
VPS13C-209ENST00000560637 LAMA4Q16363 1823 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ABHD14A-ACY1A0A1B0GW23 586 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 A0A1W2PQH9 124 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 E2F8A0AVK6 867 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 O00370 1275 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TTI1O43156 1089 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TRUB2O95900 331 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 EOMESO95936 686 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ERBB2P04626 1255 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 KRT15P19012 456 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MIPP30301 263 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 TUFMP49411 452 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ZNF235Q14590 738 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 CNGA2Q16280 664 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 RTP2Q5QGT7 225 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 MFSD5Q6N075 450 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 RFWD3Q6PCD5 774 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 CCDC137Q6PK04 289 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 CIR1Q86X95 450 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 C12orf56Q8IXR9 622 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ARL14EPQ8N8R7 260 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 FAM71DQ8N9W8 422 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 APBB2Q92870 758 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 FAM136AQ96C01 138 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 RBM41Q96IZ5 413 aaKnown RBP5.67□□□□□ -1.5
VPS13C-209ENST00000560637 FSD1LQ9BXM9 530 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 NKX2-4Q9H2Z4 354 aa5.67□□□□□ -1.5
VPS13C-209ENST00000560637 ZDHHC4Q9NPG8 344 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms