RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 SMYD1Q8NB12 490 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 SPATA18Q8TC71 538 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 PRPF31Q8WWY3 499 aaKnown RBP11.79□□□□□ -0.52
CUX1-218ENST00000560541 CFAP36Q96G28 342 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 AGAP3Q96P47 875 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 CPXM1Q96SM3 734 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 TCRBV9S1A1TA0A576 114 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 EIF3FO00303 357 aaPredicted RBP11.79□□□□□ -0.52
CUX1-218ENST00000560541 KRT38O76015 456 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 ATP6V1C1P21283 382 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 CCNG1P51959 295 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 BACE1P56817 501 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 CCDC6Q16204 474 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 C4orf50Q6ZRC1 276 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 PCGF5Q86SE9 256 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 MECRQ9BV79 373 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 ITM2BQ9Y287 266 aa11.79□□□□□ -0.52
CUX1-218ENST00000560541 GYG2O15488 501 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 KRT36O76013 467 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 PIGRP01833 764 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 GJB1P08034 283 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 ZCCHC18P0CG32 403 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 KCNA3P22001 575 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 HOXD12P35452 270 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 KPNB1Q14974 876 aaKnown RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 RCN1Q15293 331 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 SLC44A4Q53GD3 710 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 DUS1LQ6P1R4 473 aaKnown RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 BBS12Q6ZW61 710 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 RTKN2Q8IZC4 609 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 AGBL3Q8NEM8 1001 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 DNAJC9Q8WXX5 260 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 CDHR1Q96JP9 859 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 MAFBQ9Y5Q3 323 aaPredicted RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 FER1L6Q2WGJ9 1857 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 CCDC195A0A1B0GUA6 201 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 FAM237BA0A1B0GVD1 139 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 E5RJQ4 531 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 ADCY3O60266 1144 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 INHBAP08476 426 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 UBTFL6P0CB48 400 aaPredicted RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 MIPP30301 263 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 ASPAP45381 313 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 HADHQ16836 314 aaKnown RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 CDO1Q16878 200 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 DUOXA2Q1HG44 320 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 CNPY1Q3B7I2 92 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 CDHR3Q6ZTQ4 885 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 PRPF39Q86UA1 669 aaKnown RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 ALYREFQ86V81 257 aaKnown RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 WDR49Q8IV35 697 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 REPS2Q8NFH8 660 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 TRIM56Q9BRZ2 755 aaKnown RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 DHRS4Q9BTZ2 278 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 ZNF395Q9H8N7 513 aaPredicted RBP11.78□□□□□ -0.52
CUX1-218ENST00000560541 INIPQ9NRY2 104 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 HMGXB4Q9UGU5 601 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 LRRC42Q9Y546 428 aa11.78□□□□□ -0.52
CUX1-218ENST00000560541 RGPD3A6NKT7 1758 aaPredicted RBP11.77□□□□□ -0.52
CUX1-218ENST00000560541 RGPD4Q7Z3J3 1758 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 MAGEA13PA6NCF6 341 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 MCF2LO15068 1137 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 GRAP2O75791 330 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 ERBB2P04626 1255 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 KRT7P08729 469 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 MYL2P10916 166 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 PTPN7P35236 360 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 DPYSL3Q14195 570 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 SGSM1Q2NKQ1 1148 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 WASHC2DQ5SRD0 308 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 PPP1R2P3Q6NXS1 205 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 DARS2Q6PI48 645 aaKnown RBP11.77□□□□□ -0.52
CUX1-218ENST00000560541 C1orf228Q6PIY5 440 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 VPS52Q8N1B4 723 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 PPM1NQ8N819 430 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 RNF149Q8NC42 400 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 MTMR14Q8NCE2 650 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 MCUR1Q96AQ8 359 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 ZBED3Q96IU2 234 aaPredicted RBP11.77□□□□□ -0.52
CUX1-218ENST00000560541 CYTH2Q99418 400 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 ASCC2Q9H1I8 757 aaPredicted RBP11.77□□□□□ -0.52
CUX1-218ENST00000560541 ACAD9Q9H845 621 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 KCNK13Q9HB14 408 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 PFDN4Q9NQP4 134 aa11.77□□□□□ -0.52
CUX1-218ENST00000560541 MARCOQ9UEW3 520 aaPredicted RBP11.77□□□□□ -0.52
CUX1-218ENST00000560541 TDRKHQ9Y2W6 561 aaKnown RBP11.77□□□□□ -0.52
CUX1-218ENST00000560541 TRAFD1O14545 582 aaPredicted RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 TM9SF1O15321 606 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 FAM189A1O60320 539 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 CCDC22O60826 627 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 KITP10721 976 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 TSNAXIP1Q2TAA8 658 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 ACSBG2Q5FVE4 666 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 NIPA2Q8N8Q9 360 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 WDR60Q8WVS4 1066 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 DNAJC1Q96KC8 554 aaKnown RBP11.77□□□□□ -0.53
CUX1-218ENST00000560541 TWNKQ96RR1 684 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 WRNIP1Q96S55 665 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 SIKE1Q9BRV8 207 aa11.77□□□□□ -0.53
CUX1-218ENST00000560541 BTBD10Q9BSF8 475 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms