RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-222ENST00000560435 EPN2O95208 641 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 FGF3P11487 239 aaPredicted RBP3.47□□□□□ -1.85
SPG11-222ENST00000560435 ALDH7A1P49419 539 aaKnown RBP3.47□□□□□ -1.85
SPG11-222ENST00000560435 BCAT1P54687 386 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 SLC14A1Q13336 389 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 CCNIQ14094 377 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 DCAF12L1Q5VU92 463 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 RFX8Q6ZV50 586 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 B4GALNT4Q76KP1 1039 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 TMPRSS12Q86WS5 348 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 TMEM255BQ8WV15 326 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 HIC2Q96JB3 615 aa3.47□□□□□ -1.85
SPG11-222ENST00000560435 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP3.47□□□□□ -1.85
SPG11-222ENST00000560435 C2CD4BA6NLJ0 364 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 INPPL1O15357 1258 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 SPRY2O43597 315 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 TLX3O43711 291 aaPredicted RBP3.46□□□□□ -1.86
SPG11-222ENST00000560435 CD63P08962 238 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 CREB1P16220 341 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 HILS1P60008 231 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 MFSD13AQ14CX5 517 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 EARS2Q5JPH6 523 aaKnown RBP3.46□□□□□ -1.86
SPG11-222ENST00000560435 FBXL22Q6P050 247 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 COL23A1Q86Y22 540 aaPredicted RBP3.46□□□□□ -1.86
SPG11-222ENST00000560435 FBXL14Q8N1E6 418 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 CELF5Q8N6W0 485 aaKnown RBP3.46□□□□□ -1.86
SPG11-222ENST00000560435 ATP2A3Q93084 1043 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 PPP2R3CQ969Q6 453 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 TMX1Q9H3N1 280 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 GBA2Q9HCG7 927 aaPredicted RBP3.46□□□□□ -1.86
SPG11-222ENST00000560435 DECR2Q9NUI1 292 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 TMEM45AQ9NWC5 275 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 MGAT4CQ9UBM8 478 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 ERRFI1Q9UJM3 462 aaPredicted RBP3.46□□□□□ -1.86
SPG11-222ENST00000560435 PRKAB1Q9Y478 270 aa3.46□□□□□ -1.86
SPG11-222ENST00000560435 A0A087WWL8 130 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 ZNF814B7Z6K7 855 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 CLIC1O00299 241 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 NTN3O00634 580 aaPredicted RBP3.45□□□□□ -1.86
SPG11-222ENST00000560435 TBXAS1P24557 533 aaPredicted RBP3.45□□□□□ -1.86
SPG11-222ENST00000560435 ARRB2P32121 409 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 MTMR1Q13613 665 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 FAM110CQ1W6H9 321 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 PGS1Q32NB8 556 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 PTCHD3Q3KNS1 767 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 PLA1AQ53H76 456 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 CCDC157Q569K6 752 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 SDE2Q6IQ49 451 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 NR2C2APQ86WQ0 139 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 SPATA2LQ8IUW3 424 aaPredicted RBP3.45□□□□□ -1.86
SPG11-222ENST00000560435 SPARTQ8N0X7 666 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 IQCF1Q8N6M8 205 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 MIB2Q96AX9 1013 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 MTFMTQ96DP5 389 aaKnown RBP3.45□□□□□ -1.86
SPG11-222ENST00000560435 KAZALD1Q96I82 304 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 NTPCRQ9BSD7 190 aaKnown RBP3.45□□□□□ -1.86
SPG11-222ENST00000560435 TUBB6Q9BUF5 446 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 VN1R3Q9BXE9 311 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 MYLK2Q9H1R3 596 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 TRIM36Q9NQ86 728 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 USP22Q9UPT9 525 aa3.45□□□□□ -1.86
SPG11-222ENST00000560435 EVPLQ92817 2033 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 AKAP10O43572 662 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 NDUFB8O95169 186 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 HOXB2P14652 356 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 EPHA3P29320 983 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 PRKAR1BP31321 381 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 ITKQ08881 620 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 KEAP1Q14145 624 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 PFKFB3Q16875 520 aaPredicted RBP3.44□□□□□ -1.86
SPG11-222ENST00000560435 FAM57BQ71RH2 274 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 ZNF329Q86UD4 541 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 DNAJC5GQ8N7S2 189 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 BCAS4Q8TDM0 211 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 WFIKKN2Q8TEU8 576 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 NUDCD2Q8WVJ2 157 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 EDC3Q96F86 508 aaKnown RBP3.44□□□□□ -1.86
SPG11-222ENST00000560435 WDYHV1Q96HA8 205 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 MED30Q96HR3 178 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 CDK5RAP3Q96JB5 506 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 MRGPRX1Q96LB2 322 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 SCNM1Q9BWG6 230 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 CCDC8Q9H0W5 538 aaPredicted RBP3.44□□□□□ -1.86
SPG11-222ENST00000560435 CD93Q9NPY3 652 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 PCDHA7Q9UN72 937 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 PCDHA12Q9UN75 941 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 NOTCH3Q9UM47 2321 aa3.44□□□□□ -1.86
SPG11-222ENST00000560435 A0A087WYN8 130 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 SERINC4A6NH21 518 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 TNFRSF13BO14836 293 aaPredicted RBP3.43□□□□□ -1.86
SPG11-222ENST00000560435 PLAUP00749 431 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 POU2F2P09086 479 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 POLD2P49005 469 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 MTHFSP49914 203 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 P2RX3P56373 397 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 TIRAPP58753 221 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 PPATQ06203 517 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 NFATC4Q14934 902 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 PTPN21Q16825 1174 aa3.43□□□□□ -1.86
SPG11-222ENST00000560435 LMBRD2Q68DH5 695 aaPredicted RBP3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms