RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 IRF7Q92985 503 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 RPP25Q9BUL9 199 aaKnown RBP13.67□□□□□ -0.22
NEDD8-208ENST00000560427 TRIM62Q9BVG3 475 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 NUP58Q9BVL2 599 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 C1QTNF1Q9BXJ1 281 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 NACA2Q9H009 215 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 ACP6Q9NPH0 428 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 WNT16Q9UBV4 365 aa13.67□□□□□ -0.22
NEDD8-208ENST00000560427 CHORDC1Q9UHD1 332 aaPredicted RBP13.67□□□□□ -0.22
NEDD8-208ENST00000560427 ZNF638Q14966 1978 aaKnown RBP13.66□□□□□ -0.22
NEDD8-208ENST00000560427 A0A1W2PQH9 124 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 ZNF263O14978 683 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 CHADO15335 359 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 COCHO43405 550 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 CDH5P33151 784 aaPredicted RBP13.66□□□□□ -0.22
NEDD8-208ENST00000560427 PBX1P40424 430 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 GOLGA8FQ08AF8 430 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 GOLGA8DPQ0D2H9 430 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 PDCLQ13371 301 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 TRIM67Q6ZTA4 783 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 SCD5Q86SK9 330 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 TMEM110Q86TL2 294 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 TMEM35BQ8NCS4 154 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 MSANTD3Q96H12 275 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 SLC4A5Q9BY07 1137 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 PLA2G2FQ9BZM2 168 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 ULBP1Q9BZM6 244 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 MIS12Q9H081 205 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 OLA1Q9NTK5 396 aaKnown RBP13.66□□□□□ -0.22
NEDD8-208ENST00000560427 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.66□□□□□ -0.22
NEDD8-208ENST00000560427 NAGPAQ9UK23 515 aa13.66□□□□□ -0.22
NEDD8-208ENST00000560427 ITIH6Q6UXX5 1313 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 MYO16Q9Y6X6 1858 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 A0A1W2PQJ5 194 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 GFPT2O94808 682 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 CALCAP01258 141 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 MBL2P11226 248 aaPredicted RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 RARGP13631 454 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 FERP16591 822 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 ATP5C1P36542 298 aaKnown RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 MLLT6P55198 1093 aaPredicted RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 DAOAP59103 153 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 YWHAGP61981 247 aaKnown RBP eCLIP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 GPC5P78333 572 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 CDR2Q01850 454 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 MTF1Q14872 753 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 ZNF77Q15935 545 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 CC2D1AQ6P1N0 951 aaPredicted RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 TRIM72Q6ZMU5 477 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 BEND5Q7L4P6 421 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 BHLHA9Q7RTU4 235 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 ZDHHC17Q8IUH5 632 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 MSANTD4Q8NCY6 345 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 IPO4Q8TEX9 1081 aaKnown RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 DDX1Q92499 740 aaKnown RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 GOLGA1Q92805 767 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 RSPRY1Q96DX4 576 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 SLC22A12Q96S37 553 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 CYP2S1Q96SQ9 504 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 TTYH3Q9C0H2 523 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 SMG9Q9H0W8 520 aaKnown RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 NUCKS1Q9H1E3 243 aaKnown RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 PDCL3Q9H2J4 239 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 CCSER2Q9H7U1 834 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 BRD9Q9H8M2 597 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 NMUR1Q9HB89 426 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 ST7Q9NRC1 585 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 ABCC13Q9NSE7 274 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 DNMT3LQ9UJW3 386 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 NOCTQ9UK39 431 aaKnown RBP13.65□□□□□ -0.22
NEDD8-208ENST00000560427 FBXL21Q9UKT6 434 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 CCL26Q9Y258 94 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 A0A0C4DFX4 3053 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 MYH10P35580 1976 aa13.65□□□□□ -0.22
NEDD8-208ENST00000560427 ANAPC1Q9H1A4 1944 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 LEFTY2O00292 366 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 ARNTLO00327 626 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 NARSO43776 548 aaKnown RBP13.64□□□□□ -0.23
NEDD8-208ENST00000560427 LCP1P13796 627 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 GLULP15104 373 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 GDI1P31150 447 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 RGS7P49802 495 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 PRKCQQ04759 706 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 GRM2Q14416 872 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 PDGFRLQ15198 375 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 BTBD8Q5XKL5 378 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 C1orf228Q6PIY5 440 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 RSRC2Q7L4I2 434 aaKnown RBP13.64□□□□□ -0.23
NEDD8-208ENST00000560427 BMP8AQ7Z5Y6 402 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 NOP9Q86U38 636 aaKnown RBP13.64□□□□□ -0.23
NEDD8-208ENST00000560427 RNF214Q8ND24 703 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 C1orf131Q8NDD1 294 aaKnown RBP13.64□□□□□ -0.23
NEDD8-208ENST00000560427 ST13P5Q8NFI4 369 aaPredicted RBP13.64□□□□□ -0.23
NEDD8-208ENST00000560427 SH3RF2Q8TEC5 729 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 BAP1Q92560 729 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 ASIC4Q96FT7 647 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 SHDQ96IW2 340 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 PPP1R13BQ96KQ4 1090 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 RNF38Q9H0F5 515 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 OSER1Q9NX31 292 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms