RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 SPOPLQ6IQ16 392 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 TTC30AQ86WT1 665 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 SLC9A9Q8IVB4 645 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 ALLCQ8N6M5 410 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 MDGA1Q8NFP4 955 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 GOLGA5Q8TBA6 731 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 RNF166Q96A37 237 aaPredicted RBP12.34□□□□□ -0.43
USP3-214ENST00000559718 SMOQ99835 787 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 DMAP1Q9NPF5 467 aaPredicted RBP12.34□□□□□ -0.43
USP3-214ENST00000559718 KRT82Q9NSB4 513 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 IL37Q9NZH6 218 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 CFAP45Q9UL16 551 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 MMP17Q9ULZ9 603 aa12.34□□□□□ -0.43
USP3-214ENST00000559718 MYO18AQ92614 2054 aaKnown RBP12.33□□□□□ -0.44
USP3-214ENST00000559718 SGK1O00141 431 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 RHOBTB1O94844 696 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 KAT7O95251 611 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 KLF8O95600 359 aaPredicted RBP12.33□□□□□ -0.44
USP3-214ENST00000559718 ADH5P11766 374 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 PFKFB1P16118 471 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 NDST1P52848 882 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 AP3M2P53677 418 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 KDSRQ06136 332 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 DSG2Q14126 1118 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 ELF2Q15723 593 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 CRY1Q16526 586 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 ZACNQ401N2 412 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 HECTD3Q5T447 861 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 CEP135Q66GS9 1140 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 SV2AQ7L0J3 742 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 RASSF3Q86WH2 238 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 DDX42Q86XP3 938 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP3-214ENST00000559718 KIAA1958Q8N8K9 716 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 C12orf29Q8N999 325 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 IL17RCQ8NAC3 791 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 TXNDC5Q8NBS9 432 aaKnown RBP12.33□□□□□ -0.44
USP3-214ENST00000559718 PDZD8Q8NEN9 1154 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 SLC2A14Q8TDB8 520 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 PTCD2Q8WV60 388 aaKnown RBP12.33□□□□□ -0.44
USP3-214ENST00000559718 OVCA2Q8WZ82 227 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 SMARCD1Q96GM5 515 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 TNIP3Q96KP6 325 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 PNKPQ96T60 521 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 VPS45Q9NRW7 570 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 FAM49BQ9NUQ9 324 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 CACNA1BQ00975 2339 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 ATP8B3O60423 1300 aa12.33□□□□□ -0.44
USP3-214ENST00000559718 THADAQ6YHU6 1953 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 ACACBO00763 2458 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 E2F8A0AVK6 867 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 BCLAF3A2AJT9 711 aaKnown RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 PDXKO00764 312 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 ADAM23O75077 832 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 CAVIN2O95810 425 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 TBX18O95935 607 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 ADH1CP00326 375 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 ASS1P00966 412 aaKnown RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 APODP05090 189 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 ZDHHC11BP0C7U3 371 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 IRF1P10914 325 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 PDIA4P13667 645 aaKnown RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 CMA1P23946 247 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 KIR2DL1P43626 348 aaPredicted RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 ASPAP45381 313 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 MAP3K7CLP57077 242 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 MRPS21P82921 87 aaKnown RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 SGSM1Q2NKQ1 1148 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 USP39Q53GS9 565 aaKnown RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 N4BP2L1Q5TBK1 243 aaPredicted RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 SNX30Q5VWJ9 437 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 PMS2CLQ68D20 193 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 GPRIN1Q7Z2K8 1008 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 BBS7Q8IWZ6 715 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 PHTF2Q8N3S3 785 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 FRMD1Q8N878 549 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 NAT16Q8N8M0 369 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 CCDC26Q8TAB7 109 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 RLN3Q8WXF3 142 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 CNOT6LQ96LI5 555 aaKnown RBP12.32□□□□□ -0.44
USP3-214ENST00000559718 TWNKQ96RR1 684 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 ARHGEF4Q9NR80 690 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 TBC1D14Q9P2M4 693 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 HPSEQ9Y251 543 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 SH3BP1Q9Y3L3 701 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 MYH10P35580 1976 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 NUP205Q92621 2012 aa12.32□□□□□ -0.44
USP3-214ENST00000559718 A0A0A0MRY4 1105 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 FAM92AA1XBS5 289 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 TRIM24O15164 1050 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 KRT37O76014 449 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 HLA-DRAP01903 254 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 RPN1P04843 607 aaKnown RBP12.31□□□□□ -0.44
USP3-214ENST00000559718 TRIM49P0CI25 452 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 TRIM49CP0CI26 452 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 ADORA2BP29275 332 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 EIF2DP41214 584 aaKnown RBP12.31□□□□□ -0.44
USP3-214ENST00000559718 GRIA2P42262 883 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 PIK3CAP42336 1068 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 TUBP50607 506 aa12.31□□□□□ -0.44
USP3-214ENST00000559718 LSM11P83369 360 aaKnown RBP eCLIP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms