RNA–Protein interactions for RNA: ENST00000558471.5

LRRC28-206, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 793 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-206ENST00000558471 DEPDC1BQ8WUY9 529 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 DDX1Q92499 740 aaKnown RBP13.14□□□□□ -0.31
LRRC28-206ENST00000558471 SPAG5Q96R06 1193 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 LHX5Q9H2C1 402 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 KIF9Q9HAQ2 790 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 CYLDQ9NQC7 956 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 SLC2A4RGQ9NR83 387 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 IFNKQ9P0W0 207 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 CYTH4Q9UIA0 394 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 NAGPAQ9UK23 515 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 NUDT5Q9UKK9 219 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 ARHGAP26Q9UNA1 814 aa13.14□□□□□ -0.31
LRRC28-206ENST00000558471 KIF26AQ9ULI4 1882 aaPredicted RBP13.14□□□□□ -0.31
LRRC28-206ENST00000558471 TICRRQ7Z2Z1 1910 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 ZNF263O14978 683 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 TLR5O60602 858 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 TBX18O95935 607 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 MBL2P11226 248 aaPredicted RBP13.13□□□□□ -0.31
LRRC28-206ENST00000558471 RARGP13631 454 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 PSEN1P49768 467 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 IER5LQ5T953 404 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 TAF3Q5VWG9 929 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 CACNA2D4Q7Z3S7 1137 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 PASD1Q8IV76 773 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 YAF2Q8IY57 180 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 SIX6OS1Q8N1H7 587 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 SCML4Q8N228 414 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 ASIC4Q96FT7 647 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 ZFYVE19Q96K21 471 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 SLC4A5Q9BY07 1137 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 BRD9Q9H8M2 597 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 C11orf16Q9NQ32 467 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 CNGB3Q9NQW8 809 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 ST7Q9NRC1 585 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.13□□□□□ -0.31
LRRC28-206ENST00000558471 SMPD4Q9NXE4 827 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 WNT16Q9UBV4 365 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 CPQQ9Y646 472 aa13.13□□□□□ -0.31
LRRC28-206ENST00000558471 YJEFN3A6XGL0 299 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 E7ENQ6 273 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 LEFTY2O00292 366 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 CHADO15335 359 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 RALAP11233 206 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 TCF3P15923 654 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 ATP5C1P36542 298 aaKnown RBP13.12□□□□□ -0.31
LRRC28-206ENST00000558471 PBX1P40424 430 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 DAOAP59103 153 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 YWHAGP61981 247 aaKnown RBP eCLIP13.12□□□□□ -0.31
LRRC28-206ENST00000558471 ZNF77Q15935 545 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 HFE2Q6ZVN8 426 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 TMEM110Q86TL2 294 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 SCUBE3Q8IX30 993 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 ARHGAP18Q8N392 663 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 ZNF276Q8N554 614 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 TTC16Q8NEE8 873 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 EPS8L1Q8TE68 723 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 SH3RF2Q8TEC5 729 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 CLEC4CQ8WTT0 213 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 BAP1Q92560 729 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 IRF7Q92985 503 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 ZFRQ96KR1 1074 aaKnown RBP13.12□□□□□ -0.31
LRRC28-206ENST00000558471 XPO4Q9C0E2 1151 aaKnown RBP13.12□□□□□ -0.31
LRRC28-206ENST00000558471 MIS12Q9H081 205 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 GKN1Q9NS71 199 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 CLIC5Q9NZA1 410 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 NOCTQ9UK39 431 aaKnown RBP13.12□□□□□ -0.31
LRRC28-206ENST00000558471 FBXL21Q9UKT6 434 aa13.12□□□□□ -0.31
LRRC28-206ENST00000558471 COL4A2P08572 1712 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 FAM86C2PA6NEL3 165 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 TMEM221A6NGB7 291 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 E5RJQ4 531 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 M0R296 226 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 ARNTLO00327 626 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 MDM4O15151 490 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 MMEP08473 750 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 CHRNB2P17787 502 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 ACADSBP45954 432 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 PFKPQ01813 784 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 ARID5AQ03989 594 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 USP4Q13107 963 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 PDCLQ13371 301 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 MTF1Q14872 753 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 ARHGAP29Q52LW3 1261 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 SLC44A4Q53GD3 710 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 C10orf120Q5SQS8 335 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 BSPRYQ5W0U4 402 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 C1orf131Q8NDD1 294 aaKnown RBP13.11□□□□□ -0.31
LRRC28-206ENST00000558471 SLC20A1Q8WUM9 679 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 IRGQQ8WZA9 623 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 CPXM1Q96SM3 734 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 FAM83CQ9BQN1 747 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 KLF16Q9BXK1 252 aaPredicted RBP13.11□□□□□ -0.31
LRRC28-206ENST00000558471 TTYH3Q9C0H2 523 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 NACA2Q9H009 215 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 PDCL3Q9H2J4 239 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 THG1LQ9NWX6 298 aaKnown RBP13.11□□□□□ -0.31
LRRC28-206ENST00000558471 TJP2Q9UDY2 1190 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 CA14Q9ULX7 337 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 MYOFQ9NZM1 2061 aa13.11□□□□□ -0.31
LRRC28-206ENST00000558471 COL4A3Q01955 1670 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms