RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SPATA18Q8TC71 538 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 LRRC8CQ8TDW0 803 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 FBF1Q8TES7 1133 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 RXFP2Q8WXD0 754 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 APBB2Q92870 758 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF668Q96K58 619 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 PITPNM3Q9BZ71 974 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 GCOM2Q9BZD3 368 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 TUT1Q9H6E5 874 aaKnown RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 GBA2Q9HCG7 927 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 STAU2Q9NUL3 570 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 MORF4L1Q9UBU8 362 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 TJP2Q9UDY2 1190 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 PRKAG3Q9UGI9 489 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 PCSK1NQ9UHG2 260 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 XPO7Q9UIA9 1087 aaKnown RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ZMYND8Q9ULU4 1186 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 IKBKGQ9Y6K9 419 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 E5RJQ4 531 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 KIF3CO14782 793 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 APOL1O14791 398 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 MDM4O15151 490 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 CREB3O43889 395 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ATP2C2O75185 946 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 DCTN3O75935 186 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 GSTA2P09210 222 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF286BP0CG31 522 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 TAC1P20366 129 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 CA4P22748 312 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 AXLP30530 894 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ALDH3A1P30838 453 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SLC8A1P32418 973 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 EPHX2P34913 555 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 MSH2P43246 934 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 MNAT1P51948 309 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 BASP1P80723 227 aaKnown RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 DPYSL3Q14195 570 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 FASTKD3Q14CZ7 662 aaKnown RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SETDB1Q15047 1291 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ZKSCAN8Q15776 578 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 DGKDQ16760 1214 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 TMEM63BQ5T3F8 832 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SWT1Q5T5J6 900 aaKnown RBP7.58□□□□□ -1.2
VPS13C-206ENST00000558338 LDLRAD1Q5T700 205 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 HHATQ5VTY9 493 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 DMRTA1Q5VZB9 504 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ARHGAP17Q68EM7 881 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SLC27A1Q6PCB7 646 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ARCQ7LC44 396 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 KIAA0319LQ8IZA0 1049 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 FBXO36Q8NEA4 188 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 OR6J1Q8NGC5 347 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 DENND1AQ8TEH3 1009 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 RTP4Q96DX8 246 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SLC10A4Q96EP9 437 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SNX27Q96L92 541 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF560Q96MR9 790 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 RNF157Q96PX1 679 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 CYTH2Q99418 400 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF670Q9BS34 389 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 C16orf70Q9BSU1 422 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 DHRS4Q9BTZ2 278 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 R3HDMLQ9H3Y0 253 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 SLC5A4Q9NY91 659 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 RABGEF1Q9UJ41 708 aa7.58□□□□□ -1.2
VPS13C-206ENST00000558338 BCLAF3A2AJT9 711 aaKnown RBP7.57□□□□□ -1.2
VPS13C-206ENST00000558338 H7C0C1 242 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 SLC34A2O95436 690 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ZBED1O96006 694 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 CD4P01730 458 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 MMP3P08254 477 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ALADP13716 330 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PNPLA4P41247 253 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ACADSBP45954 432 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ATP5OP48047 213 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 GTF2A2P52657 109 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 BCAT1P54687 386 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 GDF10P55107 478 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 SLC6A3Q01959 620 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ORC1Q13415 861 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 RIPK1Q13546 671 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 MPP2Q14168 576 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ELOAQ14241 798 aaKnown RBP7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PKN2Q16513 984 aaKnown RBP7.57□□□□□ -1.2
VPS13C-206ENST00000558338 SPRED3Q2MJR0 410 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 BBS9Q3SYG4 887 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 GALNTL6Q49A17 601 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 DUSP28Q4G0W2 176 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 PKDCCQ504Y2 493 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 SPDYAQ5MJ70 313 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 FYB2Q5VWT5 728 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 NOTUMQ6P988 496 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 OLFML1Q6UWY5 402 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 DLK2Q6UY11 383 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 C3orf62Q6ZUJ4 267 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 MOB2Q70IA6 237 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ANKRD23Q86SG2 305 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 ANKMY2Q8IV38 441 aa7.57□□□□□ -1.2
VPS13C-206ENST00000558338 UNC45BQ8IWX7 931 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms