RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 MCRS1Q96EZ8 462 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 CCDC106Q9BWC9 280 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 KLC2Q9H0B6 622 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 ASCC2Q9H1I8 757 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 NRBP2Q9NSY0 501 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TOMM70O94826 608 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 ENO1P06733 434 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 AOC1P19801 751 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TGM2P21980 687 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 OSBPP22059 807 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 YWHAZP63104 245 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 PDK2Q15119 407 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TIFABQ6ZNK6 161 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 KRT27Q7Z3Y8 459 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 ALYREFQ86V81 257 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 NUDCD3Q8IVD9 361 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 ULK2Q8IYT8 1036 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 KIAA0319LQ8IZA0 1049 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 PPM1NQ8N819 430 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 PPP2R3CQ969Q6 453 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 TRIM4Q9C037 500 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 C10orf88Q9H8K7 445 aa16.92■□□□□ 0.3
SHMT2-231ENST00000557433 METTL5Q9NRN9 209 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 ZC3H7BQ9UGR2 993 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 CPSF3Q9UKF6 684 aaKnown RBP16.92■□□□□ 0.3
SHMT2-231ENST00000557433 KIAA1217Q5T5P2 1943 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 IGKV6D-21A0A0A0MT36 114 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 KLHL33A6NCF5 533 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 APOEP02649 317 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 CD19P15391 556 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 AMPD1P23109 780 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 RAB27AP51159 221 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 CAPSQ13938 189 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 TARBP2Q15633 366 aaKnown RBP16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ZNF394Q53GI3 561 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 RIPOR1Q6ZS17 1223 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 CYS1Q717R9 158 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ARID3BQ8IVW6 561 aaPredicted RBP16.91■□□□□ 0.3
SHMT2-231ENST00000557433 CTAGE3PQ8IX95 158 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 REPS2Q8NFH8 660 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 USP6NLQ92738 828 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ATG4CQ96DT6 458 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ANKRD36BP1Q96IX9 119 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ACAP3Q96P50 834 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 CNPY3Q9BT09 278 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 CALN1Q9BXU9 219 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 SDCBP2Q9H190 292 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 XYLT2Q9H1B5 865 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 POPDC2Q9HBU9 364 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 THAP1Q9NVV9 213 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ZDHHC7Q9NXF8 308 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 ARMCX1Q9P291 453 aa16.91■□□□□ 0.3
SHMT2-231ENST00000557433 HBS1LQ9Y450 684 aaKnown RBP16.91■□□□□ 0.3
SHMT2-231ENST00000557433 BCLAF3A2AJT9 711 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 GAS2O43903 313 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 B4GALT4O60513 344 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 RFPL1O75677 317 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 RAD17O75943 681 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 KLHL2O95198 593 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 BPGMP07738 259 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 CD48P09326 243 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ZNF143P52747 638 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 SP4Q02446 784 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 TNFAIP1Q13829 316 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 HNRNPDQ14103 355 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 CHI3L2Q15782 390 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 RNF220Q5VTB9 566 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 PRPF39Q86UA1 669 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 TREML1Q86YW5 311 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 EXOC8Q8IYI6 725 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ECSITQ9BQ95 431 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 BCO2Q9BYV7 579 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 PPP1R12CQ9BZL4 782 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 FAM124BQ9H5Z6 455 aaPredicted RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 RAB6BQ9NRW1 208 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ETAA1Q9NY74 926 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 SOX13Q9UN79 622 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 SSX2IPQ9Y2D8 614 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 RIPK3Q9Y572 518 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 SLC4A7Q9Y6M7 1214 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ZNF487B1APH4 448 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 E5RJQ4 531 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 H7C0C1 242 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 MSCO60682 206 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 PIAS1O75925 651 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 LYNP07948 512 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 HARSP12081 509 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 MYL4P12829 197 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 CHRNA5P30532 468 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ATP5OP48047 213 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 MRPS5P82675 430 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 MTMR2Q13614 643 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 SNRNP48Q6IEG0 339 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 CDHR3Q6ZTQ4 885 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 WDR75Q8IWA0 830 aaKnown RBP16.9■□□□□ 0.3
SHMT2-231ENST00000557433 ACMSDQ8TDX5 336 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 HSPH1Q92598 858 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 JADE3Q92613 823 aa16.9■□□□□ 0.3
SHMT2-231ENST00000557433 CFAP36Q96G28 342 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms