RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, human

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SLIRP-208	ENST00000556956	HIP1R	O75146	1068 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PRDM1	O75626	825 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	KLHL18	O94889	574 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SUN1	O94901	812 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PDE8B	O95263	885 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	FTCD	O95954	541 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	AGT	P01019	485 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	LMNA	P02545	664 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	LTF	P02788	710 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	FES	P07332	822 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PLEK	P08567	350 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PYGM	P11217	842 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SCG2	P13521	617 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CHN1	P15882	459 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	KRT15	P19012	456 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CNGA1	P29973	690 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ATP5D	P30049	168 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PDE6C	P51160	858 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PMS2	P54278	862 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	DRG2	P55039	364 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	NPEPPS	P55786	919 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ASIC1	P78348	528 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	GFPT1	Q06210	699 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	KLHL30	Q0D2K2	578 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	MYO1E	Q12965	1108 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	DYNC1I2	Q13409	638 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ORC2	Q13416	577 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	FOXE3	Q13461	319 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SERINC3	Q13530	473 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	BLMH	Q13867	455 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	USP10	Q14694	798 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PUM3	Q15397	648 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	TAF11	Q15544	211 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	UAP1	Q16222	522 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PDCD2	Q16342	344 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	IL17A	Q16552	155 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SLC18A3	Q16572	532 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PFKFB3	Q16875	520 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ARHGAP44	Q17R89	818 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	WDR72	Q3MJ13	1102 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	KRT71	Q3SY84	523 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ACCSL	Q4AC99	568 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CMPK2	Q5EBM0	449 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	LCE1A	Q5T7P2	110 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	DENND2C	Q68D51	928 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CENPP	Q6IPU0	288 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	MIS18BP1	Q6P0N0	1132 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SLC30A9	Q6PML9	568 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	BTNL9	Q6UXG8	535 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	UNC13D	Q70J99	1090 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	KRT26	Q7Z3Y9	468 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	TBC1D1	Q86TI0	1168 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PROSER1	Q86XN7	944 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	RASGEF1C	Q8N431	466 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	GUF1	Q8N442	669 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	STPG3	Q8N7X2	389 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SPATA5	Q8NB90	893 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CFAP61	Q8NHU2	1237 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CALML6	Q8TD86	181 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SH3TC2	Q8TF17	1288 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ZFAND2B	Q8WV99	257 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ATXN2L	Q8WWM7	1075 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	E2F7	Q96AV8	911 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	GRAMD1A	Q96CP6	724 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	TLCD1	Q96CP7	247 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	MBD6	Q96DN6	1003 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	MTMR8	Q96EF0	704 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	DTNBP1	Q96EV8	351 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	STAMBPL1	Q96FJ0	436 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	THOC1	Q96FV9	657 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PGM2	Q96G03	612 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	RUNDC3B	Q96NL0	473 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	INPP4A	Q96PE3	977 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ZNF317	Q96PQ6	595 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PSMB7	Q99436	277 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	TSC22D3	Q99576	134 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	PAIP2	Q9BPZ3	127 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ELAC2	Q9BQ52	826 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SELENOS	Q9BQE4	189 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	LZTS2	Q9BRK4	669 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	LSM14B	Q9BX40	385 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	MRPL4	Q9BYD3	311 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CELF4	Q9BZC1	486 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ROPN1B	Q9BZX4	212 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	KATNBL1	Q9H079	304 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ZMYND12	Q9H0C1	365 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	TAOK3	Q9H2K8	898 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	VCX	Q9H320	206 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	CCDC134	Q9H6E4	229 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ECT2	Q9H8V3	914 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	ROPN1	Q9HAT0	212 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SLC39A2	Q9NP94	309 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	FAM207A	Q9NSI2	230 aa	Predicted RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	INTS9	Q9NV88	658 aa	Known RBP	3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	GALNT8	Q9NY28	637 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SLC5A4	Q9NY91	659 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SNTG2	Q9NY99	539 aa		3.08	□□□□□ -1.92
SLIRP-208	ENST00000556956	SMARCAL1	Q9NZC9	954 aa		3.08	□□□□□ -1.92

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms