RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ANKRD52Q8NB46 1076 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 SUMF1Q8NBK3 374 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 CCDC26Q8TAB7 109 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 HEXIM2Q96MH2 286 aaKnown RBP16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 EPC1Q9H2F5 836 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 CHORDC1Q9UHD1 332 aaPredicted RBP16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 RWDD2AQ9UIY3 292 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 MYO16Q9Y6X6 1858 aa16.93■□□□□ 0.3
CCDC88C-209ENST00000554872 MYH10P35580 1976 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 K7ESF4 209 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 ATG13O75143 517 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 ABL1P00519 1130 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 PAEPP09466 180 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 ACO1P21399 889 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 SATB1Q01826 763 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 GCNT1Q02742 428 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 ZNF394Q53GI3 561 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 MLKLQ8NB16 471 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 ATRIPQ8WXE1 791 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 CD101Q93033 1021 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 NT5C1BQ96P26 610 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 CDK5RAP1Q96SZ6 601 aaKnown RBP16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 LINC00597Q9H2U6 94 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 CCSER2Q9H7U1 834 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 SMPD4Q9NXE4 827 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 CLIC5Q9NZA1 410 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 CFAP97Q9P2B7 532 aa16.92■□□□□ 0.3
CCDC88C-209ENST00000554872 CCDC163A0A0D9SF12 145 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 CYP26A1O43174 497 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 CYP17A1P05093 508 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 CCDC192P0DO97 292 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 CNR2P34972 360 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 PGFP49763 221 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 GALK1P51570 392 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 BCAT1P54687 386 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 SLC8A3P57103 927 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 SGO2Q562F6 1265 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 TADA2BQ86TJ2 420 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 JAKMIP2Q96AA8 810 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 CLSTN2Q9H4D0 955 aa16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.91■□□□□ 0.3
CCDC88C-209ENST00000554872 XPO1O14980 1071 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 HOXC11O43248 304 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 GREM1O60565 184 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 ADH1CP00326 375 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 EGFP01133 1207 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 AFPP02771 609 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 VDRP11473 427 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 ATP5C1P36542 298 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 OPRD1P41143 372 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 KCNH2Q12809 1159 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 DHCR24Q15392 516 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 PKDCCQ504Y2 493 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 PM20D1Q6GTS8 502 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 TSSK4Q6SA08 328 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 HTR3DQ70Z44 454 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 PIGZQ86VD9 579 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 TTC30AQ86WT1 665 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 SCML4Q8N228 414 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 ARHGAP18Q8N392 663 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 EZH1Q92800 747 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 KLF16Q9BXK1 252 aaPredicted RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 SRRTQ9BXP5 876 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 FBRSL1Q9HCM7 1045 aaKnown RBP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 OSER1Q9NX31 292 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 CNTN6Q9UQ52 1028 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 KIAA1549LQ6ZVL6 1849 aa16.9■□□□□ 0.3
CCDC88C-209ENST00000554872 PTPRZ1P23471 2315 aaPredicted RBP16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 A0A0A0MRY4 1105 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 O00370 1275 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 SETSIPP0DME0 302 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 PRKCSHP14314 528 aaPredicted RBP16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 PLA2G4AP47712 749 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 ZNF132P52740 706 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 STX17P56962 302 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 GOLGA8FQ08AF8 430 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 GOLGA8DPQ0D2H9 430 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 BST2Q10589 180 aaKnown RBP16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 STILQ15468 1287 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 CAMK4Q16566 473 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 RHBDF2Q6PJF5 856 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 SCD5Q86SK9 330 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 LONP2Q86WA8 852 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 EHBP1Q8NDI1 1231 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 MED15Q96RN5 788 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 NACA2Q9H009 215 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 NMUR1Q9HB89 426 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 DNMT3LQ9UJW3 386 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 TSPAN16Q9UKR8 245 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 SH3BP1Q9Y3L3 701 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 GPR179Q6PRD1 2367 aa16.89■□□□□ 0.29
CCDC88C-209ENST00000554872 EP300Q09472 2414 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 A0A1W2PQH9 124 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 RNF40O75150 1001 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 MEA1Q16626 185 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 NAIF1Q69YI7 327 aaPredicted RBP16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 LCLAT1Q6UWP7 414 aa16.88■□□□□ 0.29
CCDC88C-209ENST00000554872 SYT13Q7L8C5 426 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms