RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 COX16Q9P0S2 106 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 INPP5FQ9Y2H2 1132 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 TRPV2Q9Y5S1 764 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 SCN10AQ9Y5Y9 1956 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 C2CD4BA6NLJ0 364 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 SRRM3A6NNA2 597 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-212ENST00000554467 MGEA5O60502 916 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 HUS1O60921 280 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 ADAMTS4O75173 837 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 TRUB2O95900 331 aaKnown RBP12.21□□□□□ -0.45
SHMT2-212ENST00000554467 POMCP01189 267 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 CD4P01730 458 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 PECAM1P16284 738 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-212ENST00000554467 IFNAR2P48551 515 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 ARSEP51690 589 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 CLCNKBP51801 687 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 HADHQ16836 314 aaKnown RBP12.21□□□□□ -0.45
SHMT2-212ENST00000554467 CCDC14Q49A88 953 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 IZUMO3Q5VZ72 239 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 HIBCHQ6NVY1 386 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-212ENST00000554467 OLFML1Q6UWY5 402 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 C3orf58Q8NDZ4 430 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 GSTCDQ8NEC7 633 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 SLC35F5Q8WV83 523 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 WDR35Q9P2L0 1181 aa12.21□□□□□ -0.45
SHMT2-212ENST00000554467 CYB561D2O14569 222 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 BEST1O76090 585 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 LINGO3P0C6S8 592 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 KCNE1P15382 129 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 RAB27AP51159 221 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 CDH6P55285 790 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 ADCY1Q08828 1119 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 GPS1Q13098 491 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 KYNUQ16719 465 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 CA9Q16790 459 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 CCDC38Q502W7 563 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 PKDCCQ504Y2 493 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 LRRC38Q5VT99 294 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 NME8Q8N427 588 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 FAM172AQ8WUF8 416 aa12.21□□□□□ -0.46
SHMT2-212ENST00000554467 BANF1O75531 89 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 SNUPNO95149 360 aaKnown RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 ZNF143P52747 638 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 GAD2Q05329 585 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 CAPRIN2Q6IMN6 1127 aaKnown RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 ZC3H18Q86VM9 953 aaKnown RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 NETO2Q8NC67 525 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 GRK7Q8WTQ7 553 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 KHSRPQ92945 711 aaKnown RBP eCLIP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 C9orf72Q96LT7 481 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 SENP6Q9GZR1 1112 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 CDC42EP4Q9H3Q1 356 aaKnown RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 NOD1Q9Y239 953 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 NEU2Q9Y3R4 380 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 F8W810 466 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 KRT7P08729 469 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 PPP6R3Q5H9R7 873 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 KIAA0319Q5VV43 1072 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 C1orf228Q6PIY5 440 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 CYP4V2Q6ZWL3 525 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 SERINC5Q86VE9 423 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 CD99L2Q8TCZ2 262 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 MGARPQ8TDB4 240 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 ZNF560Q96MR9 790 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 RUNDC3BQ96NL0 473 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 ASNSD1Q9NWL6 643 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 DDX56Q9NY93 547 aaKnown RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 PADI3Q9ULW8 664 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 ARL5CA6NH57 179 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 RIPK2O43353 540 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 KLRC2P26717 231 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 ABL2P42684 1182 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 NDUFV1P49821 464 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 IRF5Q13568 498 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 LONRF1Q17RB8 773 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 LRIG3Q6UXM1 1119 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 AGAP11Q8TF27 550 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 SLCO2A1Q92959 643 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 PPP1R10Q96QC0 940 aaKnown RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 CNPY3Q9BT09 278 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 RHOBTB2Q9BYZ6 727 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 TSPYL2Q9H2G4 693 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-212ENST00000554467 BATF3Q9NR55 127 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 KIAA1257Q9ULG3 409 aa12.2□□□□□ -0.46
SHMT2-212ENST00000554467 PRPSAP2O60256 369 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 RPS6KA3P51812 740 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 IFI35P80217 286 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-212ENST00000554467 MDH1BQ5I0G3 518 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 AGMOQ6ZNB7 445 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 RSPH3Q86UC2 560 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 ARFGAP2Q8N6H7 521 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 FNIP1Q8TF40 1166 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 FAM149B1Q96BN6 582 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 KDM4CQ9H3R0 1056 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 TMPRSS4Q9NRS4 437 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 WHRNQ9P202 907 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 RALGAPA2Q2PPJ7 1873 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 DCAF8L1A6NGE4 600 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 MAP3K13O43283 966 aa12.19□□□□□ -0.46
SHMT2-212ENST00000554467 PITX1P78337 314 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms