RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 TMEM161AQ9NX61 479 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.35□□□□□ -1.55
VTI1B-202ENST00000553619 AGAP1Q9UPQ3 857 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 SNX11Q9Y5W9 270 aa5.35□□□□□ -1.55
VTI1B-202ENST00000553619 ANK1P16157 1881 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 GOLGA6L9A6NEM1 432 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 LRRC53A6NM62 1247 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 C9IYK1 514 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 TRAPPC3O43617 180 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 AKR1B10O60218 316 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 HUS1O60921 280 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 NBNO60934 754 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 VNN1O95497 513 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ASS1P00966 412 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 AMHP03971 560 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ALDH2P05091 517 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ITGB3P05106 788 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 EN2P19622 333 aaPredicted RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 LRPAP1P30533 357 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 CYP2C18P33260 490 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 USP8P40818 1118 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 PRKCIP41743 596 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 TAF6P49848 677 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 KLK7P49862 253 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 CLCN7P51798 805 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 MYL6P60660 151 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 TNNC1P63316 161 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 NOP14P78316 857 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 RNASELQ05823 741 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 RING1Q06587 406 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 GRIK3Q13003 919 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 PPIGQ13427 754 aaKnown RBP eCLIP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 CUL2Q13617 745 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 LRRC26Q2I0M4 334 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 WDR72Q3MJ13 1102 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 SV2CQ496J9 727 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 TDRD12Q587J7 1177 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 NOMO2Q5JPE7 1267 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 WIPI1Q5MNZ9 446 aaPredicted RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 LCE4AQ5TA78 99 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 IQCEQ6IPM2 695 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 DCLRE1AQ6PJP8 1040 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ARMCX6Q7L4S7 300 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 DEFB128Q7Z7B8 93 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 RTN4RL1Q86UN2 441 aaPredicted RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ZSCAN30Q86W11 494 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ZNF677Q86XU0 584 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 NPAS4Q8IUM7 802 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 EFCAB13Q8IY85 973 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 RNF169Q8NCN4 708 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 OR5B17Q8NGF7 314 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 DIS3LQ8TF46 1054 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 HPDLQ96IR7 371 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 COLEC11Q9BWP8 271 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 MRPL9Q9BYD2 267 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 MTMR12Q9C0I1 747 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 PDCL3Q9H2J4 239 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 MTIF3Q9H2K0 278 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 NXF3Q9H4D5 531 aaKnown RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 SIX2Q9NPC8 291 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 TBX21Q9UL17 535 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 KIAA1257Q9ULG3 409 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 ZKSCAN5Q9Y2L8 839 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 HES2Q9Y543 173 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 PCDHB4Q9Y5E5 795 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 FHOD1Q9Y613 1164 aa5.34□□□□□ -1.55
VTI1B-202ENST00000553619 EPN1Q9Y6I3 576 aaPredicted RBP5.34□□□□□ -1.55
VTI1B-202ENST00000553619 KIAA0100Q14667 2235 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 TDRD15B5MCY1 1934 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 RALGAPA2Q2PPJ7 1873 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 ANO9A1A5B4 782 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 ARL5CA6NH57 179 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 DBX1A6NMT0 343 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 KPNA7A9QM74 516 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 EIF3CLB5ME19 914 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 FOXN3O00409 490 aaPredicted RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PIRO00625 290 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 INPPL1O15357 1258 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 MED7O43513 233 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 MGEA5O60502 916 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 BAIAP3O94812 1187 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 FGBP02675 491 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PAEPP09466 180 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 CCDC175P0C221 793 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 POLR2BP30876 1174 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 LHX1P48742 406 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PDE6CP51160 858 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 JAM2P57087 298 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 SNX16P57768 344 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 ZP2Q05996 745 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 TUSC3Q13454 348 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 BMS1Q14692 1282 aaKnown RBP5.33□□□□□ -1.56
VTI1B-202ENST00000553619 STILQ15468 1287 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 MEA1Q16626 185 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 PTPN21Q16825 1174 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 C9orf57Q5W0N0 161 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 DPY19L2P1Q6NXN4 242 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 DSTYKQ6XUX3 929 aa5.33□□□□□ -1.56
VTI1B-202ENST00000553619 AGMOQ6ZNB7 445 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms