RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TMCO4Q5TGY1 634 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 CIAPIN1Q6FI81 312 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 TRMT10BQ6PF06 316 aaKnown RBP5.05□□□□□ -1.6
LIMA1-214ENST00000552783 PPIL6Q8IXY8 311 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 CPNE9Q8IYJ1 553 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 ST13P4Q8IZP2 240 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-214ENST00000552783 ABRAQ8N0Z2 381 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 PHTF2Q8N3S3 785 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 WDTC1Q8N5D0 677 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 CCDC33Q8N5R6 958 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 PPM1NQ8N819 430 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 SLC44A1Q8WWI5 657 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 NKD2Q969F2 451 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-214ENST00000552783 LENG1Q96BZ8 264 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-214ENST00000552783 CFAP36Q96G28 342 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 MFSD14AQ96MC6 490 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 PGLYRP2Q96PD5 576 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 OXCT2Q9BYC2 517 aaPredicted RBP5.05□□□□□ -1.6
LIMA1-214ENST00000552783 IMPG2Q9BZV3 1241 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 VCX3BQ9H321 246 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 VCX3AQ9NNX9 186 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 APPL1Q9UKG1 709 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 INPP5FQ9Y2H2 1132 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 NUB1Q9Y5A7 615 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 STK24Q9Y6E0 443 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 SLC4A7Q9Y6M7 1214 aa5.05□□□□□ -1.6
LIMA1-214ENST00000552783 TCRBV5S1A1TA0A578 114 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SDR42E2A6NKP2 422 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SOCS7O14512 581 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PMM2O15305 246 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CCNE2O96020 404 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PENKP01210 267 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 HLA-DRAP01903 254 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ITGAVP06756 1048 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 P4HBP07237 508 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ASNSP08243 561 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CD19P15391 556 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 NELFEP18615 380 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SLC5A2P31639 672 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RFC1P35251 1148 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 NCKAP1LP55160 1127 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 NLRP11P59045 1033 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 YWHAGP61981 247 aaKnown RBP eCLIP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GCNT1Q02742 428 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 R3HDM1Q15032 1099 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 DRICH1Q6PGQ1 229 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 DCUN1D2Q6PH85 259 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 IYDQ6PHW0 289 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 C15orf39Q6ZRI6 1047 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 LCA5Q86VQ0 697 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CTAGE3PQ8IX95 158 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RCOR2Q8IZ40 523 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 EMC1Q8N766 993 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 OR5B17Q8NGF7 314 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ABTB1Q969K4 478 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 HSPBAP1Q96EW2 488 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TAAR1Q96RJ0 339 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PPP1R16BQ96T49 567 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SENP7Q9BQF6 1050 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SENP6Q9GZR1 1112 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RBM38Q9H0Z9 239 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MAN1C1Q9NR34 630 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 KCNK4Q9NYG8 393 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GABBR1Q9UBS5 961 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ZNF70Q9UC06 446 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 EXOC7Q9UPT5 735 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GINS2Q9Y248 185 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PLLPQ9Y342 182 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 HBS1LQ9Y450 684 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 NR2E3Q9Y5X4 410 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CCDC160A6NGH7 325 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TTLL13PA6NNM8 815 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 H3BSA7 217 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 TMX2-CTNND1H3BSU7 103 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 COPEO14579 308 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 FOXD2O60548 495 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PFDN1O60925 122 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CIB2O75838 187 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 EDN1P05305 212 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 KRT19P08727 400 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 WEE2P0C1S8 567 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CSH1P0DML2 217 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 CSH2P0DML3 217 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 IMPDH2P12268 514 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MMP8P22894 467 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RPL10P27635 214 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 ADORA2AP29274 412 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RPS6P62753 249 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MRPS9P82933 396 aaKnown RBP5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MYBPC1Q00872 1141 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 PDK1Q15118 436 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 GRAMD1BQ3KR37 738 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 EFHC1Q5JVL4 640 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 RABGAP1LQ5R372 815 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SH3PXD2AQ5TCZ1 1133 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 MROH9Q5TGP6 573 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 FAM91A1Q658Y4 838 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SWSAP1Q6NVH7 229 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 SCARA5Q6ZMJ2 495 aa5.04□□□□□ -1.6
LIMA1-214ENST00000552783 FRMD7Q6ZUT3 714 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms