RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 KIAA1328Q86T90 577 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 DNAAF5Q86Y56 855 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 SCN4BQ8IWT1 228 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 PDZD8Q8NEN9 1154 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 TPCN2Q8NHX9 752 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 SCAMP5Q8TAC9 235 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 CASP10Q92851 521 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ULBP1Q9BZM6 244 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 TLE6Q9H808 572 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 CERS4Q9HA82 394 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 POPDC2Q9HBU9 364 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 OSGEPQ9NPF4 335 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ST7Q9NRC1 585 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 ABCC13Q9NSE7 274 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 DZANK1Q9NVP4 752 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 CHD7Q9P2D1 2997 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 COG5Q9UP83 839 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 MTCH2Q9Y6C9 303 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 DUSP10Q9Y6W6 482 aa10.05□□□□□ -0.8
LIMA1-211ENST00000552338 CHD9Q3L8U1 2897 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 A0A0U1RQJ8 604 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 YJEFN3A6XGL0 299 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 E7ENQ6 273 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 RFXAPO00287 272 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SOX1O00570 391 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 PRRG1O14668 218 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 DAB1O75553 588 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 FGF19O95750 216 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 IGLV3-25P01717 112 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 LTFP02788 710 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 EPCAMP16422 314 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 WEE1P30291 646 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 MAN1A1P33908 653 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 NOS2P35228 1153 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 RFC1P35251 1148 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 MATKP42679 507 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SLC1A1P43005 524 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF143P52747 638 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 USP46P62068 366 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 RPL7AP62424 266 aaKnown RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 TWF1Q12792 350 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 NNTQ13423 1086 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 PIGHQ14442 188 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 GRIN2CQ14957 1233 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 VEPH1Q14D04 833 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 CYP4A22Q5TCH4 519 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 OR6B2Q6IFH4 312 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 C11orf63Q6NUN7 778 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 NYAP1Q6ZVC0 841 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 STRADAQ7RTN6 431 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 TMEM150AQ86TG1 271 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 TMC8Q8IU68 726 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SIX6OS1Q8N1H7 587 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 LRRC57Q8N9N7 239 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SLC7A14Q8TBB6 771 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF564Q8TBZ8 553 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 ATRIPQ8WXE1 791 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 PIWIL1Q96J94 861 aaKnown RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 NPY6RQ99463 290 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SEPT5Q99719 369 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SELENOOQ9BVL4 669 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 NUP85Q9BW27 656 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 PRKD2Q9BZL6 878 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 SYNCQ9H7C4 482 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 IL21Q9HBE4 155 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 MAN1C1Q9NR34 630 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 TLR8Q9NR97 1041 aaKnown RBP10.04□□□□□ -0.8
LIMA1-211ENST00000552338 ZMYM5Q9UJ78 669 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 CLUHO75153 1309 aa10.04□□□□□ -0.8
LIMA1-211ENST00000552338 HELZP42694 1942 aaKnown RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 USP27XA6NNY8 438 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 MYO1FO00160 1098 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF500O60304 480 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 SOAT2O75908 522 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 GLP2RO95838 553 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 OLFM2O95897 454 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 LRG1P02750 347 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 USP17L7P0C7H9 530 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 LCP1P13796 627 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 HOXB8P17481 243 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 PCK1P35558 622 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 FLT3P36888 993 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 NRIP1P48552 1158 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF252P-AS1Q0IIN9 211 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 HYAL1Q12794 435 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 TAF10Q12962 218 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ADGRE1Q14246 886 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 SLC25A52Q3SY17 297 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ARHGAP29Q52LW3 1261 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 C2CD6Q53TS8 623 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 PPM1LQ5SGD2 360 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 FAM102AQ5T9C2 384 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-211ENST00000552338 ZNF697Q5TEC3 545 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 BSPRYQ5W0U4 402 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 TRNP1Q6NT89 227 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 DNAJC24Q6P3W2 148 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 DENND4AQ7Z401 1863 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 VN1R2Q8NFZ6 395 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 TRIM58Q8NG06 486 aa10.03□□□□□ -0.8
LIMA1-211ENST00000552338 JOSD2Q8TAC2 188 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms