RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TMPRSS12Q86WS5 348 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 CACUL1Q86Y37 369 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 IGSF22Q8N9C0 903 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 C1orf216Q8TAB5 229 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 MYLPFQ96A32 169 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 ZFRQ96KR1 1074 aaKnown RBP15.41■□□□□ 0.06
VPS29-209ENST00000551655 ZNF560Q96MR9 790 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 TIPINQ9BVW5 301 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 ASB7Q9H672 318 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 STARD13Q9Y3M8 1113 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 KNTC1P50748 2209 aa15.41■□□□□ 0.06
VPS29-209ENST00000551655 K7ENM7 598 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 HUS1O60921 280 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 JUPP14923 745 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 MAGEA11P43364 429 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 IFRD2Q12894 506 aaPredicted RBP15.4■□□□□ 0.06
VPS29-209ENST00000551655 TARDBPQ13148 414 aaKnown RBP eCLIP15.4■□□□□ 0.06
VPS29-209ENST00000551655 KRT79Q5XKE5 535 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 GRAMD4Q6IC98 578 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 SDE2Q6IQ49 451 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 IL27RAQ6UWB1 636 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 SPACA3Q8IXA5 215 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 FUBP3Q96I24 572 aaKnown RBP eCLIP15.4■□□□□ 0.06
VPS29-209ENST00000551655 SPATA17Q96L03 361 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 DNAJC17Q9NVM6 304 aaKnown RBP15.4■□□□□ 0.06
VPS29-209ENST00000551655 USP36Q9P275 1121 aaKnown RBP15.4■□□□□ 0.06
VPS29-209ENST00000551655 DACH1Q9UI36 760 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 AGAP1Q9UPQ3 857 aa15.4■□□□□ 0.06
VPS29-209ENST00000551655 TP53BP1Q12888 1972 aaPredicted RBP15.4■□□□□ 0.06
VPS29-209ENST00000551655 METTL12A8MUP2 240 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 ERVH48-1M5A8F1 160 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 REC8O95072 547 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 WISP1O95388 367 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 ITGB3P05106 788 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 ATXN8OSP0DMR3 200 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 IRF1P10914 325 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 PFKLP17858 780 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 TAF10Q12962 218 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 SF3A1Q15459 793 aaKnown RBP15.39■□□□□ 0.05
VPS29-209ENST00000551655 FUT11Q495W5 492 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 KCNT1Q5JUK3 1230 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 FAM171BQ6P995 826 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 CRELD2Q6UXH1 353 aaPredicted RBP15.39■□□□□ 0.05
VPS29-209ENST00000551655 USP49Q70CQ1 688 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 ADGRF2Q8IZF7 708 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 SNIP1Q8TAD8 396 aaKnown RBP15.39■□□□□ 0.05
VPS29-209ENST00000551655 SNX19Q92543 992 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 BAP1Q92560 729 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 TTLL2Q9BWV7 592 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 MKRN2Q9H000 416 aaKnown RBP15.39■□□□□ 0.05
VPS29-209ENST00000551655 CRTAC1Q9NQ79 661 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 SPHK2Q9NRA0 654 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 TBC1D14Q9P2M4 693 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 SNX9Q9Y5X1 595 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 TEX15Q9BXT5 2789 aa15.39■□□□□ 0.05
VPS29-209ENST00000551655 E2F8A0AVK6 867 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 B8ZZF3 427 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 H0Y8X5 98 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 SLC28A2O43868 658 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 BRINP1O60477 761 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 PLCG1P19174 1290 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 LMO2P25791 158 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 GRK6P43250 576 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 CACNA2D1P54289 1103 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 SLC12A3P55017 1021 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 CYP27A1Q02318 531 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 DNAJC3Q13217 504 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 ORC2Q13416 577 aaPredicted RBP15.38■□□□□ 0.05
VPS29-209ENST00000551655 SUZ12Q15022 739 aaKnown RBP15.38■□□□□ 0.05
VPS29-209ENST00000551655 ME3Q16798 604 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 ARSHQ5FYA8 562 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 ADALQ6DHV7 355 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 KIAA1958Q8N8K9 716 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 C1orf127Q8N9H9 656 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 SYT2Q8N9I0 419 aaPredicted RBP15.38■□□□□ 0.05
VPS29-209ENST00000551655 GTF3C6Q969F1 213 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 NAF1Q96HR8 494 aaKnown RBP15.38■□□□□ 0.05
VPS29-209ENST00000551655 SYT15Q9BQS2 421 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 CPNE5Q9HCH3 593 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 TMEM30AQ9NV96 361 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 MAGEC2Q9UBF1 373 aaPredicted RBP15.38■□□□□ 0.05
VPS29-209ENST00000551655 FTSJ1Q9UET6 329 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 NFE2L3Q9Y4A8 694 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 NUMA1Q14980 2115 aa15.38■□□□□ 0.05
VPS29-209ENST00000551655 CAPN8A6NHC0 703 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 NEDD8-MDP1E9PL57 170 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 F8VP50 259 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 GABRDO14764 452 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 COCHO43405 550 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 ANXA13P27216 316 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 PNPLA4P41247 253 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 TPMTP51580 245 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 TFAMQ00059 246 aaKnown RBP15.37■□□□□ 0.05
VPS29-209ENST00000551655 SOWAHAQ2M3V2 549 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 PREPLQ4J6C6 727 aaPredicted RBP15.37■□□□□ 0.05
VPS29-209ENST00000551655 HES3Q5TGS1 186 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 FAM124AQ86V42 546 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 TMEM86AQ8N2M4 240 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 ZSWIM2Q8NEG5 633 aa15.37■□□□□ 0.05
VPS29-209ENST00000551655 CADM4Q8NFZ8 388 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms