RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 KBTBD6Q86V97 674 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TMEM139Q8IV31 216 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 HACE1Q8IYU2 909 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TTC8Q8TAM2 541 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 PARD3BQ8TEW8 1205 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 CCDC127Q96BQ5 260 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TCEAL4Q96EI5 215 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SAAL1Q96ER3 474 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 C16orf45Q96MC5 204 aaPredicted RBP7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 ACO2Q99798 780 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 CLSTN3Q9BQT9 956 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 CORO1BQ9BR76 489 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 PAAF1Q9BRP4 392 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SCNM1Q9BWG6 230 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 STK33Q9BYT3 514 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 FZD8Q9H461 694 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SLITRK6Q9H5Y7 841 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 HAUS4Q9H6D7 363 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 RPF1Q9H9Y2 349 aaKnown RBP7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 IFT122Q9HBG6 1241 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 ZFP14Q9HCL3 533 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 MIOSQ9NXC5 875 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 GDE1Q9NZC3 331 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 AIPL1Q9NZN9 384 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 APEX2Q9UBZ4 518 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 PARP2Q9UGN5 583 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 TNFSF13BQ9Y275 285 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 LAMA1P25391 3075 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 SDK1Q7Z5N4 2213 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 MIA3Q5JRA6 1907 aa7.56□□□□□ -1.2
DEPDC4-208ENST00000549341 NAV2Q8IVL1 2488 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 C4orf47A7E2U8 309 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ZNF263O14978 683 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 TSPAN1O60635 241 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CLSTN1O94985 981 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 C1RP00736 705 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 TNNC2P02585 160 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 LRG1P02750 347 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 DLATP10515 647 aaKnown RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 MCF2P10911 925 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CHRNB1P11230 501 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 HARSP12081 509 aaKnown RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 SLC9A1P19634 815 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ADSSP30520 456 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 AXLP30530 894 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CASQ1P31415 396 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 OR1D2P34982 312 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 VIPR2P41587 438 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 GCLMP48507 274 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 KPNA1P52294 538 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 MCCD1P59942 119 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 MCL1Q07820 350 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 GRIK3Q13003 919 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 BIRC3Q13489 604 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 TUBB2AQ13885 445 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 IFI16Q16666 785 aaKnown RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 DCAF4L1Q3SXM0 396 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ZNF568Q3ZCX4 644 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 NOTUMQ6P988 496 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 TRIM65Q6PJ69 517 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 C19orf48Q6RUI8 117 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 VITQ6UXI7 678 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ZNF662Q6ZS27 426 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 VASH1Q7L8A9 365 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 TAS1R3Q7RTX0 852 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 WDR5BQ86VZ2 330 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CDR2LQ86X02 465 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CBWD2Q8IUF1 395 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 BRSK2Q8IWQ3 736 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CD302Q8IX05 232 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 FBXL13Q8NEE6 735 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 LNX1Q8TBB1 728 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CSGALNACT1Q8TDX6 532 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 WHAMMQ8TF30 809 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 PIK3R5Q8WYR1 880 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ZNF592Q92610 1267 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 GATA6Q92908 595 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ANKRD36BP1Q96IX9 119 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 TUBB2BQ9BVA1 445 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 C1QTNF2Q9BXJ5 285 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CCDC113Q9H0I3 377 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 GANQ9H2C0 597 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 ZNF334Q9HCZ1 680 aaPredicted RBP7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 RAB20Q9NX57 234 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 DNAJC12Q9UKB3 198 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 USP20Q9Y2K6 914 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 CDY1Q9Y6F8 540 aa7.55□□□□□ -1.2
DEPDC4-208ENST00000549341 UNC79Q9P2D8 2635 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 CELSR3Q9NYQ7 3312 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 SLC35F4A4IF30 521 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 FIGNL2A6NMB9 653 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 LRRIQ3A6PVS8 624 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TISP43B9A030 160 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 TAF4O00268 1085 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 PRRG1O14668 218 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 MSTNO14793 375 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 B4GALT5O43286 388 aa7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 HYAL3O43820 417 aaPredicted RBP7.54□□□□□ -1.2
DEPDC4-208ENST00000549341 NOL4O94818 638 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms