RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 C12orf29Q8N999 325 aa17.34■□□□□ 0.37
CHMP1A-204ENST00000547687 KBTBD7Q8WVZ9 684 aa17.34■□□□□ 0.37
CHMP1A-204ENST00000547687 RBM41Q96IZ5 413 aaKnown RBP17.34■□□□□ 0.37
CHMP1A-204ENST00000547687 C11orf84Q9BUA3 381 aaPredicted RBP17.34■□□□□ 0.37
CHMP1A-204ENST00000547687 FAM129AQ9BZQ8 928 aa17.34■□□□□ 0.37
CHMP1A-204ENST00000547687 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.34■□□□□ 0.37
CHMP1A-204ENST00000547687 DLL1O00548 723 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 HCRTO43612 131 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 MICAL2O94851 1124 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 POMCP01189 267 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 KRT3P12035 628 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CLCNKBP51801 687 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 PSMC1P62191 440 aaKnown RBP17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 SKOR1P84550 965 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CALCOCO2Q13137 446 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CNGA2Q16280 664 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 ANKS1BQ7Z6G8 1248 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 ACOT1Q86TX2 421 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 NIPA2Q8N8Q9 360 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 APPL2Q8NEU8 664 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CAPS2Q9BXY5 557 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CENPHQ9H3R5 247 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CWH43Q9H720 699 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 ELAC1Q9H777 363 aaKnown RBP17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 SYNCQ9H7C4 482 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 KLHL11Q9NVR0 708 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 WDR35Q9P2L0 1181 aa17.33■□□□□ 0.37
CHMP1A-204ENST00000547687 CASTOR2A6NHX0 329 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 PI4K2BG5E9Z4 385 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 SHOX2O60902 331 aaPredicted RBP17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 KRT1P04264 644 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 RFC1P35251 1148 aaPredicted RBP17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 KCNQ1P51787 676 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 CAMK1Q14012 370 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 TCEAL5Q5H9L2 206 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 ABI1Q8IZP0 508 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 SLITRK1Q96PX8 696 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 CPXM1Q96SM3 734 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 PAAF1Q9BRP4 392 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 COL25A1Q9BXS0 654 aaPredicted RBP17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 PABPC3Q9H361 631 aaKnown RBP17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 WHRNQ9P202 907 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 TJP2Q9UDY2 1190 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 KIAA1257Q9ULG3 409 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 INPP5FQ9Y2H2 1132 aa17.33■□□□□ 0.36
CHMP1A-204ENST00000547687 A8MXQ7 604 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 M0QYV0 167 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 HUS1O60921 280 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 GAS8O95995 478 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 ITIH2P19823 946 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 EIF3BP55884 814 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 PTK6Q13882 451 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 ZNF268Q14587 947 aaPredicted RBP17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 ODF2Q5BJF6 829 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 LIMS2Q7Z4I7 341 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 UNC93AQ86WB7 457 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 CCDC114Q96M63 670 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 DPEP3Q9H4B8 488 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 UBN1Q9NPG3 1134 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 DDX56Q9NY93 547 aaKnown RBP17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 LMCD1Q9NZU5 365 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 ASIC3Q9UHC3 531 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 RWDD3Q9Y3V2 267 aa17.32■□□□□ 0.36
CHMP1A-204ENST00000547687 ERBB2P04626 1255 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 RB1P06400 928 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 PDGFRBP09619 1106 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 PSMA2P25787 234 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 LMO2P25791 158 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 IRS1P35568 1242 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 GNL1P36915 607 aaPredicted RBP17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 IFFO1Q0D2I5 559 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 ZSCAN26Q16670 478 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 PPP1R26Q5T8A7 1209 aaPredicted RBP17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 EMC10Q5UCC4 262 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 KDM7AQ6ZMT4 941 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 EP400NLQ6ZTU2 488 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 XYLT1Q86Y38 959 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 COLGALT1Q8NBJ5 622 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 C3orf58Q8NDZ4 430 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 JOSD2Q8TAC2 188 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 UBA3Q8TBC4 463 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 LPIN3Q9BQK8 851 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 FAM49BQ9NUQ9 324 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 TSPAN16Q9UKR8 245 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 CYB561D2O14569 222 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 TJP3O95049 919 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 KRT10P13645 584 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 NR1D1P20393 614 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 GPD2P43304 727 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 IRAK1P51617 712 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 GSCP56915 257 aaPredicted RBP17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 COPS2P61201 443 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 SLMAPQ14BN4 828 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 KAZNQ674X7 775 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 LCLAT1Q6UWP7 414 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 MFSD7Q6UXD7 560 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 LRRC31Q6UY01 552 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 SPOCD1Q6ZMY3 1216 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 ADGRF2Q8IZF7 708 aa17.31■□□□□ 0.36
CHMP1A-204ENST00000547687 SPPL3Q8TCT6 385 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms