RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NME3Q13232 169 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 CPLX4Q7Z7G2 160 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 TP53INP2Q8IXH6 220 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 FUKQ8N0W3 1084 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 PQLC3Q8N755 202 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 GSTCDQ8NEC7 633 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 CCDC110Q8TBZ0 833 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 TBCBQ99426 244 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 SLC4A5Q9BY07 1137 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 PCDH18Q9HCL0 1135 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 TRMT13Q9NUP7 481 aaKnown RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 PCDH10Q9P2E7 1040 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 CHMP2BQ9UQN3 213 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 MYO18AQ92614 2054 aaKnown RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 GOLGA8RI6L899 631 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 COPS2P61201 443 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 IFRD2Q12894 506 aaPredicted RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 DCAF6Q58WW2 860 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 VSTM1Q6UX27 236 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 TMEM110Q86TL2 294 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 LRRC34Q8IZ02 419 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 LRRC52Q8N7C0 313 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 PLD5Q8N7P1 536 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 B3GALNT2Q8NCR0 500 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 DYDC1Q8WWB3 177 aa11.57□□□□□ -0.56
CUX1-212ENST00000547394 ATXN2LQ8WWM7 1075 aaKnown RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 DDX20Q9UHI6 824 aaKnown RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 XPO7Q9UIA9 1087 aaKnown RBP11.57□□□□□ -0.56
CUX1-212ENST00000547394 MYBPHLA2RUH7 354 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 MGEA5O60502 916 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 AOC2O75106 756 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 FAM107AO95990 144 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 AGTP01019 485 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 AMHP03971 560 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 BRAFP15056 766 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 YY1P25490 414 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 GCAP28676 217 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 GPX6P59796 221 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 MRPS6P82932 125 aaKnown RBP11.56□□□□□ -0.56
CUX1-212ENST00000547394 HIF1AQ16665 826 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 EMC10Q5UCC4 262 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 SYPL2Q5VXT5 272 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 GPRIN1Q7Z2K8 1008 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 DEFB106AQ8N104 65 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.56□□□□□ -0.56
CUX1-212ENST00000547394 PGLYRP2Q96PD5 576 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 PCDH9Q9HC56 1237 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 FAM155AB1AL88 458 aaPredicted RBP11.56□□□□□ -0.56
CUX1-212ENST00000547394 APOC4-APOC2K7ER74 178 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 APOC2P02655 101 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 AMPD1P23109 780 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 BCAR1P56945 870 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 ROR1Q01973 937 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 BST2Q10589 180 aaKnown RBP11.56□□□□□ -0.56
CUX1-212ENST00000547394 SLC10A2Q12908 348 aaPredicted RBP11.56□□□□□ -0.56
CUX1-212ENST00000547394 PKN2Q16513 984 aaKnown RBP11.56□□□□□ -0.56
CUX1-212ENST00000547394 ANKRD20A8PQ5CZ79 823 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 NT5DC4Q86YG4 428 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 ANKRD52Q8NB46 1076 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 RNF157Q96PX1 679 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 FAM105AQ9NUU6 356 aa11.56□□□□□ -0.56
CUX1-212ENST00000547394 A0A1W2PPM1 405 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 ASGR1P07306 291 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 SLC10A3P09131 477 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 GOT1P17174 413 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 BRCC3P46736 316 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 LMNB2Q03252 620 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 CACNB2Q08289 660 aaPredicted RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 ERMARDQ5T6L9 678 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 PAQR9Q6ZVX9 377 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 FBXO36Q8NEA4 188 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 SENP8Q96LD8 212 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 TSPYL2Q9H2G4 693 aaPredicted RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 RSAD1Q9HA92 442 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 RAB6BQ9NRW1 208 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 KRT82Q9NSB4 513 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 DDX43Q9NXZ2 648 aaKnown RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 DRG1Q9Y295 367 aaKnown RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 CLUHO75153 1309 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 ARL5CA6NH57 179 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 RASA4BC9J798 803 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 NRP1O14786 923 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 RASA4O43374 803 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 STAU1O95793 577 aaKnown RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 CD4P01730 458 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 CYP2F1P24903 491 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 PCK1P35558 622 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 GRIA1P42261 906 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 KCNA10Q16322 511 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 SPDYCQ5MJ68 293 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 APBB1IPQ7Z5R6 666 aaPredicted RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 SPOCK2Q92563 424 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 EDEM1Q92611 657 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 KCTD15Q96SI1 283 aaPredicted RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 ELAC2Q9BQ52 826 aaKnown RBP11.55□□□□□ -0.56
CUX1-212ENST00000547394 FAM129AQ9BZQ8 928 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 CRTAC1Q9NQ79 661 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 GTF2IRD1Q9UHL9 959 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 SNX10Q9Y5X0 201 aa11.55□□□□□ -0.56
CUX1-212ENST00000547394 BPTFQ12830 3046 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms