RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, human

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-208	ENST00000541259	HS1BP3	Q53T59	392 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	C10orf76	Q5T2E6	689 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	ZNF697	Q5TEC3	545 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	DENND5B	Q6ZUT9	1274 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	HFE2	Q6ZVN8	426 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259		Q7L0L9	218 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	KIAA1328	Q86T90	577 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	NUP93	Q8N1F7	819 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	TRIM44	Q96DX7	344 aa	Predicted RBP	9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	VCPIP1	Q96JH7	1222 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	SPATA17	Q96L03	361 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	NSUN3	Q9H649	340 aa	Known RBP	9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	PNPLA8	Q9NP80	782 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	CYLD	Q9NQC7	956 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	TRMT1	Q9NXH9	659 aa	Known RBP	9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	HSFX1	Q9UBD0	423 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	CNOT8	Q9UFF9	292 aa	Known RBP	9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	SALL4	Q9UJQ4	1053 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	MAFF	Q9ULX9	164 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	MAGED2	Q9UNF1	606 aa	Predicted RBP	9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	MTCH2	Q9Y6C9	303 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	USP3	Q9Y6I4	520 aa		9.82	□□□□□ -0.84
DDX55-208	ENST00000541259	YJEFN3	A6XGL0	299 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259		E7ENQ6	273 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	PJA2	O43164	708 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	GRAP2	O75791	330 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	IPO7	O95373	1038 aa	Known RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	GLP2R	O95838	553 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	ZBED1	O96006	694 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	CYP1A2	P05177	515 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	CALB1	P05937	261 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	CCDC175	P0C221	793 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	HMGA1	P17096	107 aa	Known RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	IGFBP4	P22692	258 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	ARHGAP25	P42331	645 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	EPHB3	P54753	998 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	DAOA	P59103	153 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	MRPS5	P82675	430 aa	Known RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	SLC6A3	Q01959	620 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	PPM1L	Q5SGD2	360 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	PLEKHA7	Q6IQ23	1121 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	OLFML1	Q6UWY5	402 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	CCDC149	Q6ZUS6	474 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	BHLHA9	Q7RTU4	235 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	REXO1L1P	Q8IX06	675 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	SIX6OS1	Q8N1H7	587 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	C12orf76	Q8N812	135 aa	Predicted RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	JOSD2	Q8TAC2	188 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	KIAA1524	Q8TCG1	905 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	IPO4	Q8TEX9	1081 aa	Known RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	WNT2B	Q93097	391 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	MCRS1	Q96EZ8	462 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	TRIM7	Q9C029	511 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	PLEKHA4	Q9H4M7	779 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	ZNF334	Q9HCZ1	680 aa	Predicted RBP	9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	OSGEP	Q9NPF4	335 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	IL37	Q9NZH6	218 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	LMCD1	Q9NZU5	365 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	INTU	Q9ULD6	942 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	COG5	Q9UP83	839 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	NCAN	O14594	1321 aa		9.81	□□□□□ -0.84
DDX55-208	ENST00000541259	NRG2	O14511	850 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	RTN3	O95197	1032 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	C1R	P00736	705 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	LRG1	P02750	347 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	MYBL1	P10243	752 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	POU3F3	P20264	500 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	YWHAQ	P27348	245 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	GSC	P56915	257 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	RNASE9	P60153	205 aa	Known RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	RPL7A	P62424	266 aa	Known RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	TAF10	Q12962	218 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	PLD1	Q13393	1074 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	MAMLD1	Q13495	774 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	HABP4	Q5JVS0	413 aa	Known RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	FAM102A	Q5T9C2	384 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	LIN9	Q5TKA1	542 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	PM20D1	Q6GTS8	502 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	TRNP1	Q6NT89	227 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	PPP1R2P3	Q6NXS1	205 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	DNAJC24	Q6P3W2	148 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	SCD5	Q86SK9	330 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	CCAR2	Q8N163	923 aa	Known RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	EMC1	Q8N766	993 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	MSANTD4	Q8NCY6	345 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	C3orf20	Q8ND61	904 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	SLC35G2	Q8TBE7	412 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	PSMG2	Q969U7	264 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	BTBD6	Q96KE9	485 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	NUP85	Q9BW27	656 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	TTLL2	Q9BWV7	592 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	LRRC3	Q9BY71	257 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	NMUR1	Q9HB89	426 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	LZTFL1	Q9NQ48	299 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	AVEN	Q9NQS1	362 aa	Predicted RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	CNGB3	Q9NQW8	809 aa		9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	METTL5	Q9NRN9	209 aa	Known RBP	9.8	□□□□□ -0.84
DDX55-208	ENST00000541259	HCFC1R1	Q9NWW0	138 aa		9.8	□□□□□ -0.84

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