RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 NDST1P52848 882 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 RAB6CQ53S08 254 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 SYCP2LQ5T4T6 812 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 SH3PXD2AQ5TCZ1 1133 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 CAPRIN2Q6IMN6 1127 aaKnown RBP13.05□□□□□ -0.32
RNF4-222ENST00000541204 RFWD3Q6PCD5 774 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 LRRC6Q86X45 466 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 UNC45BQ8IWX7 931 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 BANPQ8N9N5 519 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 NPLOC4Q8TAT6 608 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 HSPH1Q92598 858 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 MAML3Q96JK9 1138 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 PTPN18Q99952 460 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 DHRS4Q9BTZ2 278 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 ZNF518BQ9C0D4 1074 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 RAB6CQ9H0N0 254 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 MANSC1Q9H8J5 431 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 DPP3Q9NY33 737 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 LRRC42Q9Y546 428 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 BRCA2P51587 3418 aa13.05□□□□□ -0.32
RNF4-222ENST00000541204 CFAP69A5D8W1 941 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 PPEF2O14830 753 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 CILPO75339 1184 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 LRCH4O75427 683 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 LUC7L3O95232 432 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 MMP3P08254 477 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 PTDSS1P48651 473 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 RGS7P49802 495 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 SLC25A11Q02978 314 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 TNFAIP2Q03169 654 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 WASHC2DQ5SRD0 308 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 ENDOVQ8N8Q3 282 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 NIPA2Q8N8Q9 360 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 CXorf38Q8TB03 319 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 OSMRQ99650 979 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 LPIN3Q9BQK8 851 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 SNTG2Q9NY99 539 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 HEY2Q9UBP5 337 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 CPA4Q9UI42 421 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 XPO7Q9UIA9 1087 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 IQCA1LA6NCM1 817 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 NDC80O14777 642 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 UPP2O95045 317 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 BASP1P80723 227 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 CDO1Q16878 200 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 KLHL38Q2WGJ6 581 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 XYLT1Q86Y38 959 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 LINC01465Q8N7H1 131 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 FAM71DQ8N9W8 422 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 PIWIL1Q96J94 861 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 ADPGKQ9BRR6 497 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 TINF2Q9BSI4 451 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 EIF2AQ9BY44 585 aaKnown RBP13.04□□□□□ -0.32
RNF4-222ENST00000541204 NFKBIZQ9BYH8 718 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 FAM49BQ9NUQ9 324 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 LNPEPQ9UIQ6 1025 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 CHMP2BQ9UQN3 213 aa13.04□□□□□ -0.32
RNF4-222ENST00000541204 E7ENQ6 273 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 TM9SF1O15321 606 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 CDH5P33151 784 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 TAP1Q03518 808 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 SPDYAQ5MJ70 313 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 FAM102AQ5T9C2 384 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 IGDCC3Q8IVU1 814 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 PRR11Q96HE9 360 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 OSBPL1AQ9BXW6 950 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 CADM1Q9BY67 442 aaKnown RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 SAR1AQ9NR31 198 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 ARL8BQ9NVJ2 186 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 FETUBQ9UGM5 382 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 STRIP2Q9ULQ0 834 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 MGAMO43451 1857 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 SIGLEC16A6NMB1 481 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 HCRTO43612 131 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 STRNO43815 780 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 LPXNO60711 386 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 KDELR1P24390 212 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 PCK1P35558 622 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 DGKDQ16760 1214 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 DUSP28Q4G0W2 176 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 KHDC1Q4VXA5 237 aaKnown RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 ZC3H12AQ5D1E8 599 aaKnown RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 POLNQ7Z5Q5 900 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 PDIK1LQ8N165 341 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 ZNF398Q8TD17 642 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 C18orf25Q96B23 403 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 ANKRD27Q96NW4 1050 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 LBHD1Q9BQE6 289 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 TSSK1BQ9BXA7 367 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 CALN1Q9BXU9 219 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 TRIM55Q9BYV6 548 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 VPS11Q9H270 941 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 ASB7Q9H672 318 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 TLE6Q9H808 572 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 FBXO6Q9NRD1 293 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 CORO1CQ9ULV4 474 aaPredicted RBP13.03□□□□□ -0.32
RNF4-222ENST00000541204 SNX9Q9Y5X1 595 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 C2orf71A6NGG8 1288 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 E7ESA3 106 aa13.03□□□□□ -0.32
RNF4-222ENST00000541204 LIN7AO14910 233 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms