RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 UBN1Q9NPG3 1134 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 TMEM120BA0PK00 339 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ACADSBP45954 432 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 GPX6P59796 221 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ATP11AP98196 1134 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ROR1Q01973 937 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ZC3H12AQ5D1E8 599 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 RGMBQ6NW40 437 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 OSTM1Q86WC4 334 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 FAM71DQ8N9W8 422 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 PRMT1Q99873 361 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 MAK16Q9BXY0 300 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 UPF3AQ9H1J1 476 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 CLUHO75153 1309 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 TMEM63AO94886 807 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 MRPS6P82932 125 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 GAD2Q05329 585 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 DPYSL2Q16555 572 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 CA9Q16790 459 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 FNBP1LQ5T0N5 605 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 PIGWQ7Z7B1 504 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ZBED8Q8IZ13 594 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 ADGRF2Q8IZF7 708 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 PCDH19Q8TAB3 1148 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 CLEC4CQ8WTT0 213 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 P3H4Q92791 437 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 HNRNPABQ99729 332 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 SNX25Q9H3E2 840 aa14.37□□□□□ -0.11
RTN3-210ENST00000540798 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.37□□□□□ -0.11
RTN3-210ENST00000540798 TCRBV7S3A2A0A539 114 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 XPO1O14980 1071 aaKnown RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 PDGFRBP09619 1106 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 TSHRP16473 764 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 TFE3P19532 575 aaPredicted RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 TKTP29401 623 aaKnown RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 ARL4CP56559 192 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 PDIA2Q13087 525 aaKnown RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 NR1H3Q13133 447 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 MPP2Q14168 576 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 MSS51Q4VC12 460 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 ZFYVE28Q9HCC9 887 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 NGRNQ9NPE2 291 aaKnown RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 COL4A4P53420 1690 aaPredicted RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 FAM155AB1AL88 458 aaPredicted RBP14.36□□□□□ -0.11
RTN3-210ENST00000540798 GABRDO14764 452 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 CYBAP13498 195 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 ADORA2BP29275 332 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 KRT81Q14533 505 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 KCNJ11Q14654 390 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 EFHC2Q5JST6 749 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 BNIPLQ7Z465 357 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 SLC2A14Q8TDB8 520 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 TNIP3Q96KP6 325 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 DNAI2Q9GZS0 605 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 SLC24A2Q9UI40 661 aa14.36□□□□□ -0.11
RTN3-210ENST00000540798 EXOC1LA0A1B0GW35 172 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 BCLAF3A2AJT9 711 aaKnown RBP14.35□□□□□ -0.11
RTN3-210ENST00000540798 FOXO6A8MYZ6 492 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 TNPO2O14787 897 aaKnown RBP14.35□□□□□ -0.11
RTN3-210ENST00000540798 APOL1O14791 398 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 L1CAMP32004 1257 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 MAGEA9P43362 315 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 TRABD2AQ86V40 505 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 CCDC13Q8IYE1 715 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 B3GALNT2Q8NCR0 500 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 GSTCDQ8NEC7 633 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 RNF217Q8TC41 542 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 MTG1Q9BT17 334 aaPredicted RBP14.35□□□□□ -0.11
RTN3-210ENST00000540798 DHRS4Q9BTZ2 278 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 GPATCH2LQ9NWQ4 482 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 MTMR10Q9NXD2 777 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 TRPV2Q9Y5S1 764 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 HUS1O60921 280 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 DESP17661 470 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 SLC18A1P54219 525 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 RPAINQ86UA6 219 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 NMRK2Q9NPI5 230 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 CFAP69A5D8W1 941 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 BRAFP15056 766 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 RDXP35241 583 aaKnown RBP14.35□□□□□ -0.11
RTN3-210ENST00000540798 MAGEA6P43360 314 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 MGAT3Q09327 533 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 CRHR2Q13324 411 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 GKAP1Q5VSY0 366 aaPredicted RBP14.35□□□□□ -0.11
RTN3-210ENST00000540798 SCYL2Q6P3W7 929 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 DARS2Q6PI48 645 aaKnown RBP14.35□□□□□ -0.11
RTN3-210ENST00000540798 PAQR9Q6ZVX9 377 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 STRADAQ7RTN6 431 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 LRRC34Q8IZ02 419 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 FUKQ8N0W3 1084 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 DUSP16Q9BY84 665 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 RABGEF1Q9UJ41 708 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 CDY2AQ9Y6F7 541 aa14.35□□□□□ -0.11
RTN3-210ENST00000540798 CHADO15335 359 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 BANF1O75531 89 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 TWF2Q6IBS0 349 aaKnown RBP14.34□□□□□ -0.11
RTN3-210ENST00000540798 CPLX4Q7Z7G2 160 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 CKAP2Q8WWK9 683 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 KCTD13Q8WZ19 329 aa14.34□□□□□ -0.11
RTN3-210ENST00000540798 SENP6Q9GZR1 1112 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms