RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 ZNF394Q53GI3 561 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 PPP1R26Q5T8A7 1209 aaPredicted RBP12.2□□□□□ -0.46
RTN3-209ENST00000538995 KLHDC10Q6PID8 442 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 TSSK4Q6SA08 328 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 GPRIN1Q7Z2K8 1008 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 CCDC186Q7Z3E2 898 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 ZNF276Q8N554 614 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 TATDN2Q93075 761 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 HEXIM2Q96MH2 286 aaKnown RBP12.2□□□□□ -0.46
RTN3-209ENST00000538995 CDK5RAP1Q96SZ6 601 aaKnown RBP12.2□□□□□ -0.46
RTN3-209ENST00000538995 NACA2Q9H009 215 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 LINC00597Q9H2U6 94 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 CCSER2Q9H7U1 834 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 CHORDC1Q9UHD1 332 aaPredicted RBP12.2□□□□□ -0.46
RTN3-209ENST00000538995 FANCMQ8IYD8 2048 aa12.2□□□□□ -0.46
RTN3-209ENST00000538995 HELZP42694 1942 aaKnown RBP12.19□□□□□ -0.46
RTN3-209ENST00000538995 K7ESF4 209 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 CYP26A1O43174 497 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 CYP17A1P05093 508 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 ACO1P21399 889 aaKnown RBP12.19□□□□□ -0.46
RTN3-209ENST00000538995 GALK1P51570 392 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 BCAT1P54687 386 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 GOLGA8FQ08AF8 430 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 GOLGA8DPQ0D2H9 430 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 TADA2BQ86TJ2 420 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 TRIM59Q8IWR1 403 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 ADGRG2Q8IZP9 1017 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 UBR7Q8N806 425 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 ANKRD52Q8NB46 1076 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 SUMF1Q8NBK3 374 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 NT5C1BQ96P26 610 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 CLIC5Q9NZA1 410 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 RWDD2AQ9UIY3 292 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 KIAA1257Q9ULG3 409 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 SH3BP1Q9Y3L3 701 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 USP3Q9Y6I4 520 aa12.19□□□□□ -0.46
RTN3-209ENST00000538995 ZNF638Q14966 1978 aaKnown RBP12.19□□□□□ -0.46
RTN3-209ENST00000538995 CCDC163A0A0D9SF12 145 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 EGFP01133 1207 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 PAEPP09466 180 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 CCDC192P0DO97 292 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 CNR2P34972 360 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 ATP5C1P36542 298 aaKnown RBP12.18□□□□□ -0.46
RTN3-209ENST00000538995 OPRD1P41143 372 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 GCNT1Q02742 428 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 DHCR24Q15392 516 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 GAB4Q2WGN9 574 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 SGO2Q562F6 1265 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 RAB41Q5JT25 222 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 CLEC17AQ6ZS10 378 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 LONP2Q86WA8 852 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 ARHGAP18Q8N392 663 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 RUBCNQ92622 972 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 JAKMIP2Q96AA8 810 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 ACDQ96AP0 544 aa12.18□□□□□ -0.46
RTN3-209ENST00000538995 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.18□□□□□ -0.46
RTN3-209ENST00000538995 SMG5Q9UPR3 1016 aaKnown RBP12.18□□□□□ -0.46
RTN3-209ENST00000538995 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.18□□□□□ -0.46
RTN3-209ENST00000538995 FRYLO94915 3013 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 A0A1W2PQH9 124 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 XPO1O14980 1071 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 HOXC11O43248 304 aaPredicted RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 RNF40O75150 1001 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 AFPP02771 609 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 SETSIPP0DME0 302 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 RALAP11233 206 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 VDRP11473 427 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 ADH5P11766 374 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 RARGP13631 454 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 PGFP49763 221 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 STX17P56962 302 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 BST2Q10589 180 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 KCNH2Q12809 1159 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 CAMK4Q16566 473 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 NAIF1Q69YI7 327 aaPredicted RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 HTR3DQ70Z44 454 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 PIGZQ86VD9 579 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 WDR5BQ86VZ2 330 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 TTC30AQ86WT1 665 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 MLKLQ8NB16 471 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 LMO3Q8TAP4 145 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 SECISBP2LQ93073 1101 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 KLF16Q9BXK1 252 aaPredicted RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 SRRTQ9BXP5 876 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 CLSTN2Q9H4D0 955 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 NMUR1Q9HB89 426 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 FBRSL1Q9HCM7 1045 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 OSER1Q9NX31 292 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 HESX1Q9UBX0 185 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 DNMT3LQ9UJW3 386 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 NAGPAQ9UK23 515 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 LSM7Q9UK45 103 aaKnown RBP12.17□□□□□ -0.46
RTN3-209ENST00000538995 TSPAN16Q9UKR8 245 aa12.17□□□□□ -0.46
RTN3-209ENST00000538995 O00370 1275 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 GREM1O60565 184 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 CD19P15391 556 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 PLA2G4AP47712 749 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 GAD2Q05329 585 aa12.16□□□□□ -0.46
RTN3-209ENST00000538995 LRMPQ12912 555 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms