RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TCERG1LQ5VWI1 586 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 ARMCX6Q7L4S7 300 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 MON1AQ86VX9 555 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 CPA6Q8N4T0 437 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 GIPC2Q8TF65 315 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 FAM212AQ96EL1 285 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 CAMK1GQ96NX5 476 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 RPF1Q9H9Y2 349 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 METTL14Q9HCE5 456 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 ARMCX3Q9UH62 379 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 SLC6A14Q9UN76 642 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 STYXL1Q9Y6J8 313 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 MYOFQ9NZM1 2061 aa13.31□□□□□ -0.28
CLSTN3-208ENST00000538933 PPEF2O14830 753 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 GJB3O75712 270 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 PRB1P04280 392 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 TPM3P06753 285 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 PRKCSHP14314 528 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 DDX6P26196 483 aaKnown RBP eCLIP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 EEF1GP26641 437 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 HOXD12P35452 270 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 OPRD1P41143 372 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 CASP4P49662 377 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 ACOT2P49753 483 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 BFSP1Q12934 665 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 HNRNPDQ14103 355 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 TRIP6Q15654 476 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 GAB4Q2WGN9 574 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 FILIP1LQ4L180 1135 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 CC2D1AQ6P1N0 951 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 INTS8Q75QN2 995 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 HDDC3Q8N4P3 179 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 CCDC33Q8N5R6 958 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 PNPLA1Q8N8W4 532 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 OR2I1PQ8NGU4 316 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 OSCP1Q8WVF1 389 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 ANP32BQ92688 251 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 EXOC4Q96A65 974 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 CRELD1Q96HD1 420 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 MED15Q96RN5 788 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 ZCWPW1Q9H0M4 648 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 DNAAF2Q9NVR5 837 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 DMAC2Q9NW81 257 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 RBAKQ9NYW8 714 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 DKK4Q9UBT3 224 aa13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 ATXN2Q99700 1313 aaKnown RBP13.3□□□□□ -0.28
CLSTN3-208ENST00000538933 TTC26A0AVF1 554 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 EIF4E1BA6NMX2 242 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SH3BP5O60239 455 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 OPHN1O60890 802 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SERPINF2P08697 491 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 CLTAP09496 248 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 CYP3A5P20815 502 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 LILRA4P59901 499 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 C19orf57Q0VDD7 668 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 MTF1Q14872 753 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 VEPH1Q14D04 833 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SURF1Q15526 300 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 ZNF77Q15935 545 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 DUOXA1Q1HG43 343 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SLC39A12Q504Y0 691 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 TCP11X2Q5H9J9 407 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 DSTYKQ6XUX3 929 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SLCO6A1Q86UG4 719 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 LRRTM3Q86VH5 581 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 CBWD2Q8IUF1 395 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 ZC3H3Q8IXZ2 948 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 MINDY1Q8N5J2 469 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 GCNAQ96QF7 691 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SLC22A12Q96S37 553 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 SEPT5Q99719 369 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 GTPBP2Q9BX10 602 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 HAPLN2Q9GZV7 340 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 LINC00597Q9H2U6 94 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 GRPEL1Q9HAV7 217 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 DUS2Q9NX74 493 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 WNT6Q9Y6F9 365 aa13.29□□□□□ -0.28
CLSTN3-208ENST00000538933 COL12A1Q99715 3063 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 MAPK13O15264 365 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 MAP3K13O43283 966 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CBFA2T2O43439 604 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 STX10O60499 249 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CLSTN1O94985 981 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CFIP05156 583 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 FTH1P19P0C7X4 201 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CXCL8P10145 99 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 HAPLN1P10915 354 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 TNFSF9P41273 254 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 DPP6P42658 865 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 VAMP7P51809 220 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 GUCY2FP51841 1108 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 SEC13P55735 322 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 PPP2R3AQ06190 1150 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 GFPT1Q06210 699 aaPredicted RBP13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 MGAT5BQ3V5L5 792 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 CDKAL1Q5VV42 579 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 LYSMD4Q5XG99 296 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 SFTPA1Q8IWL2 248 aa13.28□□□□□ -0.28
CLSTN3-208ENST00000538933 BRSK2Q8IWQ3 736 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms