RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 EXOC1Q9NV70 894 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 GMIPQ9P107 970 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 CHORDC1Q9UHD1 332 aaPredicted RBP12.03□□□□□ -0.48
VPS28-214ENST00000531032 SERTAD1Q9UHV2 236 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 RCOR1Q9UKL0 485 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 ANGPTL2Q9UKU9 493 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 INVSQ9Y283 1065 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 PLXND1Q9Y4D7 1925 aa12.03□□□□□ -0.48
VPS28-214ENST00000531032 PDXKO00764 312 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 ADAM23O75077 832 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 AP1G2O75843 785 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 KRT37O76014 449 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 CLSTN1O94985 981 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 KCNK5O95279 499 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 ASS1P00966 412 aaKnown RBP12.02□□□□□ -0.49
VPS28-214ENST00000531032 NR3C1P04150 777 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 RPN1P04843 607 aaKnown RBP12.02□□□□□ -0.49
VPS28-214ENST00000531032 P4HA1P13674 534 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 CCDC130P13994 396 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 TIE1P35590 1138 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 P2RY2P41231 377 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 TNFRSF4P43489 277 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 ASPAP45381 313 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 GAD2Q05329 585 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 KDSRQ06136 332 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 SGSM1Q2NKQ1 1148 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 KMT5BQ4FZB7 885 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 EOGTQ5NDL2 527 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 EMC10Q5UCC4 262 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 SV2AQ7L0J3 742 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 CYP2U1Q7Z449 544 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 UNC93AQ86WB7 457 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 BBS7Q8IWZ6 715 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 SLC2A14Q8TDB8 520 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 TMC2Q8TDI7 906 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 KCNV2Q8TDN2 545 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 WHAMMQ8TF30 809 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 TAF4BQ92750 862 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 SMOQ99835 787 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 HMGXB4Q9UGU5 601 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 SH3BP1Q9Y3L3 701 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 USP24Q9UPU5 2620 aa12.02□□□□□ -0.49
VPS28-214ENST00000531032 TNRC6BQ9UPQ9 1833 aaKnown RBP12.02□□□□□ -0.49
VPS28-214ENST00000531032 IKBKBO14920 756 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 GREM1O60565 184 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 TLR5O60602 858 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 TULP3O75386 442 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 BEST1O76090 585 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 MYL1P05976 194 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 PGFP49763 221 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 NDST1P52848 882 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 ORC1Q13415 861 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 ST3GAL2Q16842 350 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 PREPLQ4J6C6 727 aaPredicted RBP12.01□□□□□ -0.49
VPS28-214ENST00000531032 C1orf220Q5T0J3 134 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 BTBD8Q5XKL5 378 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 WBP2Q969T9 261 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 FBXO44Q9H4M3 255 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 POLMQ9NP87 494 aaPredicted RBP12.01□□□□□ -0.49
VPS28-214ENST00000531032 SPHK2Q9NRA0 654 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 USP25Q9UHP3 1055 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 HPSEQ9Y251 543 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 MYH10P35580 1976 aa12.01□□□□□ -0.49
VPS28-214ENST00000531032 MYO18AQ92614 2054 aaKnown RBP12□□□□□ -0.49
VPS28-214ENST00000531032 C4orf47A7E2U8 309 aa12□□□□□ -0.49
VPS28-214ENST00000531032 KHNYNO15037 678 aaKnown RBP12□□□□□ -0.49
VPS28-214ENST00000531032 MAPK13O15264 365 aa12□□□□□ -0.49
VPS28-214ENST00000531032 PFKFB1P16118 471 aa12□□□□□ -0.49
VPS28-214ENST00000531032 CMA1P23946 247 aa12□□□□□ -0.49
VPS28-214ENST00000531032 MAP3K7CLP57077 242 aa12□□□□□ -0.49
VPS28-214ENST00000531032 INCA1Q0VD86 236 aa12□□□□□ -0.49
VPS28-214ENST00000531032 MAP7D1Q3KQU3 841 aa12□□□□□ -0.49
VPS28-214ENST00000531032 SPDYCQ5MJ68 293 aa12□□□□□ -0.49
VPS28-214ENST00000531032 DAB2IPQ5VWQ8 1189 aa12□□□□□ -0.49
VPS28-214ENST00000531032 SPOPLQ6IQ16 392 aa12□□□□□ -0.49
VPS28-214ENST00000531032 PSAPL1Q6NUJ1 521 aa12□□□□□ -0.49
VPS28-214ENST00000531032 HTR3DQ70Z44 454 aa12□□□□□ -0.49
VPS28-214ENST00000531032 LPCAT2Q7L5N7 544 aa12□□□□□ -0.49
VPS28-214ENST00000531032 TTC30AQ86WT1 665 aa12□□□□□ -0.49
VPS28-214ENST00000531032 TMEM25Q86YD3 366 aa12□□□□□ -0.49
VPS28-214ENST00000531032 C12orf29Q8N999 325 aa12□□□□□ -0.49
VPS28-214ENST00000531032 TERB1Q8NA31 727 aa12□□□□□ -0.49
VPS28-214ENST00000531032 SPRYD3Q8NCJ5 442 aa12□□□□□ -0.49
VPS28-214ENST00000531032 RLN3Q8WXF3 142 aa12□□□□□ -0.49
VPS28-214ENST00000531032 SPACA7Q96KW9 195 aa12□□□□□ -0.49
VPS28-214ENST00000531032 KLF16Q9BXK1 252 aaPredicted RBP12□□□□□ -0.49
VPS28-214ENST00000531032 NACA2Q9H009 215 aa12□□□□□ -0.49
VPS28-214ENST00000531032 PNPLA8Q9NP80 782 aa12□□□□□ -0.49
VPS28-214ENST00000531032 ZDHHC4Q9NPG8 344 aa12□□□□□ -0.49
VPS28-214ENST00000531032 CYLDQ9NQC7 956 aa12□□□□□ -0.49
VPS28-214ENST00000531032 TLR8Q9NR97 1041 aaKnown RBP12□□□□□ -0.49
VPS28-214ENST00000531032 FAM49BQ9NUQ9 324 aa12□□□□□ -0.49
VPS28-214ENST00000531032 DEC1Q9P2X7 70 aa12□□□□□ -0.49
VPS28-214ENST00000531032 EVLQ9UI08 416 aaPredicted RBP12□□□□□ -0.49
VPS28-214ENST00000531032 TRAF3IP3Q9Y228 551 aa12□□□□□ -0.49
VPS28-214ENST00000531032 FRMD4BQ9Y2L6 1034 aa12□□□□□ -0.49
VPS28-214ENST00000531032 ZFHX4Q86UP3 3567 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 A0A1B0GVL5 298 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 TCRBV21S2A2A0A5A6 115 aa11.99□□□□□ -0.49
VPS28-214ENST00000531032 TBC1D3BA6NDS4 549 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms