RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 BBS7Q8IWZ6 715 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 FAM186BQ8IYM0 893 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 CCDC150Q8NCX0 1101 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 ZMIZ2Q8NF64 920 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 WBP2Q969T9 261 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 FBXO44Q9H4M3 255 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 TLR8Q9NR97 1041 aaKnown RBP13.75□□□□□ -0.21
CPSF1-204ENST00000529288 VPS45Q9NRW7 570 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 COMMD8Q9NX08 183 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 MMP17Q9ULZ9 603 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 ZDHHC9Q9Y397 364 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 PCDHGA5Q9Y5G8 931 aa13.75□□□□□ -0.21
CPSF1-204ENST00000529288 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 SGK1O00141 431 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 IKBKBO14920 756 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 MAP3K13O43283 966 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 TLR5O60602 858 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 CAVIN2O95810 425 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 ACO1P21399 889 aaKnown RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 BCKDHBP21953 392 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 RPL13P26373 211 aaKnown RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 GRIA2P42262 883 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 DHPSP49366 369 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 PGFP49763 221 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 ADAM9Q13443 819 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 CRY1Q16526 586 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 ZNF394Q53GI3 561 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 C1orf220Q5T0J3 134 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 RNF43Q68DV7 783 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 TMEM92Q6UXU6 159 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 KRBA2Q6ZNG9 492 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 TMEM25Q86YD3 366 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 CRYBG2Q8N1P7 616 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 MDGA1Q8NFP4 955 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 TAS1R2Q8TE23 839 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 RLN3Q8WXF3 142 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 ERLEC1Q96DZ1 483 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 CYFIP2Q96F07 1278 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 ZFRQ96KR1 1074 aaKnown RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 TWNKQ96RR1 684 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 APOBEC3GQ9HC16 384 aaKnown RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 GDPD2Q9HCC8 539 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 POLMQ9NP87 494 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-204ENST00000529288 DEC1Q9P2X7 70 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 NUDT5Q9UKK9 219 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 TRAF3IP3Q9Y228 551 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 OBSL1O75147 1896 aa13.74□□□□□ -0.21
CPSF1-204ENST00000529288 MDM4O15151 490 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 CYP26A1O43174 497 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 RHOBTB3O94955 611 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 ADRB1P08588 477 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 HNRNPLP14866 589 aaKnown RBP eCLIP13.73□□□□□ -0.21
CPSF1-204ENST00000529288 PSMC2P35998 433 aaKnown RBP13.73□□□□□ -0.21
CPSF1-204ENST00000529288 WASP42768 502 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 TNFRSF4P43489 277 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 PPP3CAQ08209 521 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 DPYDQ12882 1025 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 EOGTQ5NDL2 527 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 PLA2G2CQ5R387 149 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 SNX30Q5VWJ9 437 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 TPGS1Q6ZTW0 290 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 INTS8Q75QN2 995 aaKnown RBP13.73□□□□□ -0.21
CPSF1-204ENST00000529288 ARMCX6Q7L4S7 300 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 GPRIN1Q7Z2K8 1008 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 KIAA1958Q8N8K9 716 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 IL17RCQ8NAC3 791 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 HMGB4Q8WW32 186 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 DDX1Q92499 740 aaKnown RBP13.73□□□□□ -0.21
CPSF1-204ENST00000529288 OTUB2Q96DC9 234 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 EEF2KMTQ96G04 330 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 CNOT6LQ96LI5 555 aaKnown RBP13.73□□□□□ -0.21
CPSF1-204ENST00000529288 NT5C1AQ9BXI3 368 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 DNAI2Q9GZS0 605 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 GOLPH3LQ9H4A5 285 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 SPHK2Q9NRA0 654 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 IL37Q9NZH6 218 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 ATP6V1DQ9Y5K8 247 aa13.73□□□□□ -0.21
CPSF1-204ENST00000529288 DENND4CQ5VZ89 1909 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 CEP250Q9BV73 2442 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 A0A1W2PQH9 124 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 TCRBV21S2A2A0A5A6 115 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 BCLAF3A2AJT9 711 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 NEDD8-MDP1E9PL57 170 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 TRIM24O15164 1050 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 TULP3O75386 442 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 ZNF202O95125 648 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 ZDHHC11BP0C7U3 371 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 RARGP13631 454 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 ATP5C1P36542 298 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 EIF2DP41214 584 aaKnown RBP13.72□□□□□ -0.21
CPSF1-204ENST00000529288 TUBP50607 506 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 GOLGA8FQ08AF8 430 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 GOLGA8DPQ0D2H9 430 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 C10orf76Q5T2E6 689 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 CLEC20AQ6ZU45 233 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 NUDT18Q6ZVK8 323 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 CYP2U1Q7Z449 544 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 C11orf74Q86VG3 221 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 RASSF3Q86WH2 238 aa13.72□□□□□ -0.21
CPSF1-204ENST00000529288 SMYD4Q8IYR2 804 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms