RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ZDHHC9Q9Y397 364 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 PLXND1Q9Y4D7 1925 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 ATP6V1DQ9Y5K8 247 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 SNX9Q9Y5X1 595 aa11.22□□□□□ -0.61
CPSF1-203ENST00000527916 KNTC1P50748 2209 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 CEP192Q8TEP8 1941 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 SLC9A3R1O14745 358 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 CLIC2O15247 247 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 ZBTB24O43167 697 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 STAU1O95793 577 aaKnown RBP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 CST3P01034 146 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 APODP05090 189 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 FTH1P19P0C7X4 201 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 HNRNPLP14866 589 aaKnown RBP eCLIP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 PFKLP17858 780 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 CASP1P29466 404 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 TIE1P35590 1138 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 EIF2DP41214 584 aaKnown RBP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 GPR15P49685 360 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 CYP24A1Q07973 514 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 C19orf57Q0VDD7 668 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 DDR2Q16832 855 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 SDHAF4Q5VUM1 108 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 TRAPPC11Q7Z392 1133 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 SLC9A9Q8IVB4 645 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 NELFCDQ8IXH7 590 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 ADGRF2Q8IZF7 708 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 FRMD1Q8N878 549 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 KIAA1958Q8N8K9 716 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 IL17RCQ8NAC3 791 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 RDH13Q8NBN7 331 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 SPATA32Q96LK8 384 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 CEP295NLQ96MC4 621 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 PNKPQ96T60 521 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 SCAND2PQ9GZW5 306 aaPredicted RBP11.21□□□□□ -0.61
CPSF1-203ENST00000527916 FSCN3Q9NQT6 498 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 GTF3C4Q9UKN8 822 aa11.21□□□□□ -0.61
CPSF1-203ENST00000527916 A0A1B0GVL5 298 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TCRBV21S2A2A0A5A6 115 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 PALM2-AKAP2B1ALY0 433 aaPredicted RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 SGK1O00141 431 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TULP1O00294 542 aaPredicted RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 SH3BP5O60239 455 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TACC1O75410 805 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TADA3O75528 432 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 KAT7O95251 611 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 PFKFB1P16118 471 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TNNI1P19237 187 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 WARSP23381 471 aaKnown RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 MAGEA11P43364 429 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TNFRSF4P43489 277 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 AP3M2P53677 418 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 CLDN10P78369 228 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 ZNF33AQ06730 810 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 STK4Q13043 487 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 MAPRE1Q15691 268 aaKnown RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 TRMT11Q7Z4G4 463 aaKnown RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 OSTM1Q86WC4 334 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 NAXDQ8IW45 347 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 STKLD1Q8NE28 680 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 MDM1Q8TC05 714 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 CAMK1GQ96NX5 476 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 BBC3Q96PG8 261 aaPredicted RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 CGRRF1Q99675 332 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 FAM124BQ9H5Z6 455 aaPredicted RBP11.2□□□□□ -0.62
CPSF1-203ENST00000527916 DMAC2Q9NW81 257 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 GCNT4Q9P109 453 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 CDH9Q9ULB4 789 aa11.2□□□□□ -0.62
CPSF1-203ENST00000527916 ANAPC1Q9H1A4 1944 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 PLXNB3Q9ULL4 1909 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 A0A1W2PQ27 194 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 A0A1W2PQ64 194 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 A0A1W2PQD8 194 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 C2orf78A6NCI8 922 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 PDXKO00764 312 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 EXOC3O60645 756 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ADH1CP00326 375 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 DLATP10515 647 aaKnown RBP11.19□□□□□ -0.62
CPSF1-203ENST00000527916 GNSP15586 552 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ACAT1P24752 427 aaKnown RBP11.19□□□□□ -0.62
CPSF1-203ENST00000527916 CYP2F1P24903 491 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ATICP31939 592 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 GRIA2P42262 883 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 SYKP43405 635 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 CYP2J2P51589 502 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 PLEKHG6Q3KR16 790 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 KMT5BQ4FZB7 885 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 PREPLQ4J6C6 727 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-203ENST00000527916 SYCP2LQ5T4T6 812 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 VSTM1Q6UX27 236 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 C4orf50Q6ZRC1 276 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 NUDT18Q6ZVK8 323 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 SPATA2LQ8IUW3 424 aaPredicted RBP11.19□□□□□ -0.62
CPSF1-203ENST00000527916 GRAMD1CQ8IYS0 662 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 DEFB119Q8N690 84 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 PNPLA1Q8N8W4 532 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 KIAA0895Q8NCT3 520 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 OR2I1PQ8NGU4 316 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 ADAM32Q8TC27 787 aa11.19□□□□□ -0.62
CPSF1-203ENST00000527916 KCNV2Q8TDN2 545 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms