RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 ECT2Q9H8V3 914 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 CFAP69A5D8W1 941 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 TRIM49D1C9J1S8 452 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 CLDN5O00501 218 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 PPEF2O14830 753 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 POMCP01189 267 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 IQCF3P0C7M6 154 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 PTP4A2Q12974 167 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 WSCD1Q658N2 575 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 POLNQ7Z5Q5 900 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 RIBC1Q8N443 379 aaPredicted RBP10.56□□□□□ -0.72
MCF2-209ENST00000520602 SNRNP25Q9BV90 132 aaKnown RBP10.56□□□□□ -0.72
MCF2-209ENST00000520602 TRIM55Q9BYV6 548 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 XYLT2Q9H1B5 865 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 KRT82Q9NSB4 513 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 DDX43Q9NXZ2 648 aaKnown RBP10.56□□□□□ -0.72
MCF2-209ENST00000520602 ADGRA2Q96PE1 1338 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 TULP2O00295 520 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 AVILO75366 819 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 TKTL1P51854 596 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 NT5DC4Q86YG4 428 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 EDEM1Q92611 657 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 ZFP42Q96MM3 310 aa10.56□□□□□ -0.72
MCF2-209ENST00000520602 A0A1B0GUA9 196 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 KBTBD13C9JR72 458 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 ITGAVP06756 1048 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 THP07101 528 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 MMP13P45452 471 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 TSPY1Q01534 308 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 MAP2K5Q13163 448 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 PRPSAP1Q14558 356 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 UBAP2Q5T6F2 1119 aaKnown RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 LRRC6Q86X45 466 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 THEM5Q8N1Q8 247 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 GBP7Q8N8V2 638 aaPredicted RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 UPF1Q92900 1129 aaKnown RBP eCLIP10.55□□□□□ -0.72
MCF2-209ENST00000520602 LPPQ93052 612 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 SCYL1Q96KG9 808 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 FAM111AQ96PZ2 611 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 DPEP3Q9H4B8 488 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 SMIM28A0A1B0GU29 152 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 SLC15A5A6NIM6 579 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 DARSP14868 501 aaKnown RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 NUMBP49757 651 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 FAM110CQ1W6H9 321 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 KCNT2Q6UVM3 1135 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 LCLAT1Q6UWP7 414 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 WDTC1Q8N5D0 677 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 RNF157Q96PX1 679 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 PLEKHA5Q9HAU0 1116 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 LRRC4CQ9HCJ2 640 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 KLC4Q9NSK0 619 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 PCMTD2Q9NV79 361 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 SLC38A7Q9NVC3 462 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 MARCOQ9UEW3 520 aaPredicted RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 DFFAO00273 331 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 HCRTO43612 131 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 SNAI1O95863 264 aaPredicted RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 GHRP10912 638 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 GPD2P43304 727 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 SLC12A2P55011 1212 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 GDF10P55107 478 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 CLDN10P78369 228 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 BMPR2Q13873 1038 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 PIGZQ86VD9 579 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 PPP4R1Q8TF05 950 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 TFB1MQ8WVM0 346 aaKnown RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 ERP27Q96DN0 273 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 FRMD8P1Q9BZ68 369 aaPredicted RBP10.55□□□□□ -0.72
MCF2-209ENST00000520602 SLC12A6Q9UHW9 1150 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 COMMD10Q9Y6G5 202 aa10.55□□□□□ -0.72
MCF2-209ENST00000520602 PPP1R12AO14974 1030 aaPredicted RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 SETSIPP0DME0 302 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 DRD4P21917 467 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 EPHB2P29323 1055 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 GRIK1P39086 918 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 MLH1P40692 756 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 GARSP41250 739 aaKnown RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 YWHAZP63104 245 aaKnown RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 SEPT6Q14141 434 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 ACAP1Q15027 740 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 SNX17Q15036 470 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 TCEAL1Q15170 157 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 ANKRD22Q5VYY1 191 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 SPRYD7Q5W111 196 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 NUDCD3Q8IVD9 361 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 NSMCE1Q8WV22 266 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 TLCD1Q96CP7 247 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 CDHR5Q9HBB8 845 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 BFARQ9NZS9 450 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 PRG3Q9Y2Y8 225 aaPredicted RBP10.54□□□□□ -0.72
MCF2-209ENST00000520602 KCNK1O00180 336 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 LMO2P25791 158 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 SCTRP47872 440 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 SESN3P58005 492 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 CCL14Q16627 93 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 ANKRD20A8PQ5CZ79 823 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 C9orf57Q5W0N0 161 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 BTBD8Q5XKL5 378 aa10.54□□□□□ -0.72
MCF2-209ENST00000520602 TAPT1Q6NXT6 567 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms