RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 HESX1Q9UBX0 185 aa4.79□□□□□ -1.64
SQLE-204ENST00000520493 CDC23Q9UJX2 597 aa4.79□□□□□ -1.64
SQLE-204ENST00000520493 SHOC2Q9UQ13 582 aa4.79□□□□□ -1.64
SQLE-204ENST00000520493 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.79□□□□□ -1.64
SQLE-204ENST00000520493 PYCARD-AS1I3L0S3 204 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 MYO1CO00159 1063 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 QSOX1O00391 747 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 PPM1DO15297 605 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 SLC16A3O15427 465 aaKnown RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 UNC5CO95185 931 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 GRPP07492 148 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 HNRNPCP07910 306 aaKnown RBP eCLIP4.78□□□□□ -1.64
SQLE-204ENST00000520493 FAM163BP0C2L3 166 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 TXNP10599 105 aaKnown RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 HARSP12081 509 aaKnown RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 MYL4P12829 197 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 PPIFP30405 207 aaKnown RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 MAN1A1P33908 653 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 CHKAP35790 457 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 ABCG1P45844 678 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 RENBPP51606 427 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 FOXF2Q12947 444 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 CTBP1Q13363 440 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 TUBB8Q3ZCM7 444 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 C3orf38Q5JPI3 329 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 ANKRD16Q6P6B7 361 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 RNF44Q7L0R7 432 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 KRT28Q7Z3Y7 464 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 WDR53Q7Z5U6 358 aaPredicted RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 DTX2Q86UW9 622 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 LIX1LQ8IVB5 337 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 CELF5Q8N6W0 485 aaKnown RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 VGLL2Q8N8G2 317 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 TRAPPC12Q8WVT3 735 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 TBC1D5Q92609 795 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 TRIM63Q969Q1 353 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 LTV1Q96GA3 475 aaPredicted RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 GDF15Q99988 308 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 PTDSS2Q9BVG9 487 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 DHX36Q9H2U1 1008 aaKnown RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 XPNPEP3Q9NQH7 507 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 DKK3Q9UBP4 350 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 FBXO9Q9UK97 447 aaPredicted RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 CAPN11Q9UMQ6 739 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 MAGED2Q9UNF1 606 aaPredicted RBP4.78□□□□□ -1.64
SQLE-204ENST00000520493 SH2B3Q9UQQ2 575 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 PCDHGB2Q9Y5G2 931 aa4.78□□□□□ -1.64
SQLE-204ENST00000520493 LINC01548A6NM66 108 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 KCNQ3O43525 872 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 DNAJB5O75953 348 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 JTBO76095 146 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 BDNFP23560 247 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 VIPR2P41587 438 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 SLC11A2P49281 568 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 TOB1P50616 345 aaPredicted RBP4.77□□□□□ -1.65
SQLE-204ENST00000520493 ZNF134P52741 427 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 PPFIA1Q13136 1202 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 GRM1Q13255 1194 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 E2F2Q14209 437 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 EZH2Q15910 746 aaKnown RBP4.77□□□□□ -1.65
SQLE-204ENST00000520493 ZACNQ401N2 412 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 AARS2Q5JTZ9 985 aaKnown RBP4.77□□□□□ -1.65
SQLE-204ENST00000520493 LCE1AQ5T7P2 110 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 ARHGAP40Q5TG30 622 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 CCDC174Q6PII3 467 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 LDHAL6AQ6ZMR3 332 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 YAF2Q8IY57 180 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 TXLNBQ8N3L3 684 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 DNAJC5GQ8N7S2 189 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 TBATAQ96M53 351 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 SLC29A3Q9BZD2 475 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 CHST8Q9H2A9 424 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 BCCIPQ9P287 314 aaKnown RBP eCLIP4.77□□□□□ -1.65
SQLE-204ENST00000520493 ADAM21Q9UKJ8 722 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 TMX2Q9Y320 296 aa4.77□□□□□ -1.65
SQLE-204ENST00000520493 TARM1B6A8C7 271 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 CCP110O43303 1012 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 IDEP14735 1019 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 IL1R2P27930 398 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 CARSP49589 748 aaKnown RBP4.76□□□□□ -1.65
SQLE-204ENST00000520493 PDE1AP54750 535 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 POLE2P56282 527 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 LILRA4P59901 499 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 PTK2BQ14289 1009 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 SRSF7Q16629 238 aaKnown RBP eCLIP4.76□□□□□ -1.65
SQLE-204ENST00000520493 WDR78Q5VTH9 848 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 KLHDC7AQ5VTJ3 777 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 ARL6IP4Q66PJ3 421 aaKnown RBP4.76□□□□□ -1.65
SQLE-204ENST00000520493 UNC13DQ70J99 1090 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 ANKRD18AQ8IVF6 992 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 CACNA2D3Q8IZS8 1091 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 LRRC71Q8N4P6 559 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.76□□□□□ -1.65
SQLE-204ENST00000520493 SEMA6DQ8NFY4 1073 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 SMG7Q92540 1137 aaKnown RBP4.76□□□□□ -1.65
SQLE-204ENST00000520493 SPSB4Q96A44 273 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 GCC1Q96CN9 775 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 RMDN3Q96TC7 470 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 TMEM120AQ9BXJ8 343 aa4.76□□□□□ -1.65
SQLE-204ENST00000520493 GLOD4Q9HC38 313 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms