RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 CD58P19256 250 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 HOXC13P31276 330 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 PXNP49023 591 aaPredicted RBP18.48■□□□□ 0.55
DDX41-217ENST00000515562 ZNF658Q5TYW1 1059 aaPredicted RBP18.48■□□□□ 0.55
DDX41-217ENST00000515562 CLEC20AQ6ZU45 233 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 CACNA2D4Q7Z3S7 1137 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 FBXL13Q8NEE6 735 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 CYFIP2Q96F07 1278 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 HHIPQ96QV1 700 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 FAM124BQ9H5Z6 455 aaPredicted RBP18.48■□□□□ 0.55
DDX41-217ENST00000515562 PCDHA5Q9Y5H7 936 aa18.48■□□□□ 0.55
DDX41-217ENST00000515562 DNAH14Q0VDD8 3507 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 ATG2BQ96BY7 2078 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.47■□□□□ 0.55
DDX41-217ENST00000515562 SCAMP3O14828 347 aaKnown RBP18.47■□□□□ 0.55
DDX41-217ENST00000515562 AXIN1O15169 862 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 SLC16A3O15427 465 aaKnown RBP18.47■□□□□ 0.55
DDX41-217ENST00000515562 PRCPP42785 496 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 CSRP2Q16527 193 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 USP33Q8TEY7 942 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 EEF2KMTQ96G04 330 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 LOXL4Q96JB6 756 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 SEMA4GQ9NTN9 838 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 EBF1Q9UH73 591 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 SCML2Q9UQR0 700 aa18.47■□□□□ 0.55
DDX41-217ENST00000515562 K7EQS6 105 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 FKBP3Q00688 224 aaKnown RBP18.46■□□□□ 0.55
DDX41-217ENST00000515562 GOLGA8FQ08AF8 430 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 GOLGA8DPQ0D2H9 430 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 RHBDF2Q6PJF5 856 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 GPRIN1Q7Z2K8 1008 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 ENGASEQ8NFI3 743 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 SPATA20Q8TB22 786 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 WHAMMQ8TF30 809 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 SMARCE1Q969G3 411 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 JAKMIP2Q96AA8 810 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 TIGD1Q96MW7 591 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 PNKPQ96T60 521 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 CYLDQ9NQC7 956 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 RAB20Q9NX57 234 aa18.46■□□□□ 0.55
DDX41-217ENST00000515562 EML5Q05BV3 1969 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 HHLA1C9JL84 531 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 CYP26A1O43174 497 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 HOXC11O43248 304 aaPredicted RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 KAT7O95251 611 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 APODP05090 189 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 ACO1P21399 889 aaKnown RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 SEC13P55735 322 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 MRPS21P82921 87 aaKnown RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 GAD2Q05329 585 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 LRRC63Q05C16 580 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 HSF5Q4G112 596 aaPredicted RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 PREPLQ4J6C6 727 aaPredicted RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 C2orf27AQ580R0 203 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 DCAF17Q5H9S7 520 aaPredicted RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 LY6G5CQ5SRR4 150 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 TCERG1LQ5VWI1 586 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 PRR23CQ6ZRP0 262 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 ZC3H3Q8IXZ2 948 aaKnown RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 TSTD1Q8NFU3 115 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 SEMA4DQ92854 862 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 POLR3BQ9NW08 1133 aaPredicted RBP18.45■□□□□ 0.54
DDX41-217ENST00000515562 MMP17Q9ULZ9 603 aa18.45■□□□□ 0.54
DDX41-217ENST00000515562 SPAG17Q6Q759 2223 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 EPN2O95208 641 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 ATP5C1P36542 298 aaKnown RBP18.44■□□□□ 0.54
DDX41-217ENST00000515562 GRIA2P42262 883 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 PSEN1P49768 467 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 STIM1Q13586 685 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 BTBD8Q5XKL5 378 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 KLHDC10Q6PID8 442 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 TADA2BQ86TJ2 420 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 C12orf40Q86WS4 652 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 BBS7Q8IWZ6 715 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 NETO1Q8TDF5 533 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 ZC3H10Q96K80 434 aaKnown RBP18.44■□□□□ 0.54
DDX41-217ENST00000515562 RTKNQ9BST9 563 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 DUSP16Q9BY84 665 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 ARHGEF4Q9NR80 690 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 CISHQ9NSE2 258 aa18.44■□□□□ 0.54
DDX41-217ENST00000515562 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.44■□□□□ 0.54
DDX41-217ENST00000515562 PSMA7O14818 248 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 IRF1P10914 325 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 PPP1R2P41236 205 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 SLC6A11P48066 632 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 PGFP49763 221 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 DGKEP52429 567 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 KIF11P52732 1056 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 KDSRQ06136 332 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 ELF2Q15723 593 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 ZNF394Q53GI3 561 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 PPP1R26Q5T8A7 1209 aaPredicted RBP18.43■□□□□ 0.54
DDX41-217ENST00000515562 CCDC186Q7Z3E2 898 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 KBTBD6Q86V97 674 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 TMEM176AQ96HP8 235 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 HEXIM2Q96MH2 286 aaKnown RBP18.43■□□□□ 0.54
DDX41-217ENST00000515562 KLF16Q9BXK1 252 aaPredicted RBP18.43■□□□□ 0.54
DDX41-217ENST00000515562 SPHK2Q9NRA0 654 aa18.43■□□□□ 0.54
DDX41-217ENST00000515562 LSM7Q9UK45 103 aaKnown RBP18.43■□□□□ 0.54
DDX41-217ENST00000515562 PCDHGA5Q9Y5G8 931 aa18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms