RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 TRPC7Q9HCX4 862 aa10.24□□□□□ -0.77
RNF4-221ENST00000513643 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.24□□□□□ -0.77
RNF4-221ENST00000513643 TSPAN16Q9UKR8 245 aa10.24□□□□□ -0.77
RNF4-221ENST00000513643 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.24□□□□□ -0.776e-6■■■■■ 55.1
RNF4-221ENST00000513643 MRPS17Q9Y2R5 130 aaKnown RBP10.24□□□□□ -0.77
RNF4-221ENST00000513643 CPQQ9Y646 472 aa10.24□□□□□ -0.77
RNF4-221ENST00000513643 ZNF292O60281 2723 aa10.24□□□□□ -0.77
RNF4-221ENST00000513643 PATJQ8NI35 1801 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 PTPRZ1P23471 2315 aaPredicted RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 EP300Q09472 2414 aaPredicted RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 GVINP1Q7Z2Y8 2422 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 A0A0A0MRY4 1105 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 E2F8A0AVK6 867 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 PROB1E7EW31 1015 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 CYP26A1O43174 497 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 TLR5O60602 858 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 TBX18O95935 607 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 CHRM1P11229 460 aaPredicted RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 TDGF1P13385 188 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 ZNF18P17022 549 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 EEF1GP26641 437 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 GPD2P43304 727 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 PSEN1P49768 467 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 BCAT1P54687 386 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 APBA1Q02410 837 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 BST2Q10589 180 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 GAS6Q14393 721 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 NCAPHQ15003 741 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 STILQ15468 1287 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 EXOC3L4Q17RC7 722 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 TCP11X2Q5H9J9 407 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 TMEM196Q5HYL7 178 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 CCDC183Q5T5S1 534 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 GJB7Q6PEY0 223 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 GBP6Q6ZN66 633 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 C11orf57Q6ZUT1 292 aaPredicted RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 HTR3DQ70Z44 454 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 APTXQ7Z2E3 356 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 C1orf210Q8IVY1 113 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 FAM114A1Q8IWE2 563 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 RBBP8NLQ8NC74 664 aaPredicted RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 CSGALNACT1Q8TDX6 532 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 SHC3Q92529 594 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 WBP2Q969T9 261 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 CRACR2AQ9BSW2 395 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 IER2Q9BTL4 223 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 NAA15Q9BXJ9 866 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 IRF2BPLQ9H1B7 796 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 EBF3Q9H4W6 596 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 FBRSL1Q9HCM7 1045 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 UBE2TQ9NPD8 197 aaPredicted RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 TLR8Q9NR97 1041 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 DUS2Q9NX74 493 aaKnown RBP10.23□□□□□ -0.77
RNF4-221ENST00000513643 APEX2Q9UBZ4 518 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 NFE2L3Q9Y4A8 694 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 PCDHB4Q9Y5E5 795 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 WNT6Q9Y6F9 365 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 CFAP54Q96N23 3096 aa10.23□□□□□ -0.77
RNF4-221ENST00000513643 A0A1W2PQH9 124 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 KCNJ18B7U540 433 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 NCAM2O15394 837 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 CLSTN1O94985 981 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 PAPSS2O95340 614 aaPredicted RBP10.22□□□□□ -0.77
RNF4-221ENST00000513643 SETSIPP0DME0 302 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 GJA4P35212 333 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 NBL1P41271 181 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 MTIF2P46199 727 aaKnown RBP10.22□□□□□ -0.77
RNF4-221ENST00000513643 KCNJ12Q14500 433 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 UBXN2BQ14CS0 331 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 ANGPT1Q15389 498 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 GOLGA7BQ2TAP0 167 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 ZNF528Q3MIS6 628 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 PMF1Q6P1K2 205 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 RHBDF2Q6PJF5 856 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 Q6ZNB5 142 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 DDX42Q86XP3 938 aaKnown RBP eCLIP10.22□□□□□ -0.77
RNF4-221ENST00000513643 SYNPOQ8N3V7 929 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 STK32AQ8WU08 396 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 EZH1Q92800 747 aaPredicted RBP10.22□□□□□ -0.77
RNF4-221ENST00000513643 ATP2A3Q93084 1043 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 OTUB2Q96DC9 234 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 HSFY1Q96LI6 401 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 FUCA2Q9BTY2 467 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 LMAN1LQ9HAT1 526 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 PRMT8Q9NR22 394 aaPredicted RBP10.22□□□□□ -0.77
RNF4-221ENST00000513643 ANO10Q9NW15 660 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 AJAP1Q9UKB5 411 aaPredicted RBP10.22□□□□□ -0.77
RNF4-221ENST00000513643 OTOGLQ3ZCN5 2332 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 FAM186AA6NE01 2351 aa10.22□□□□□ -0.77
RNF4-221ENST00000513643 TICRRQ7Z2Z1 1910 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 H0Y858 1186 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 STK25O00506 426 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 ZBED1O96006 694 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 ABL1P00519 1130 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 CALCAP01258 141 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 MBL2P11226 248 aaPredicted RBP10.21□□□□□ -0.77
RNF4-221ENST00000513643 RARGP13631 454 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 CD19P15391 556 aa10.21□□□□□ -0.77
RNF4-221ENST00000513643 BRD2P25440 801 aaKnown RBP10.21□□□□□ -0.77
RNF4-221ENST00000513643 ATP5C1P36542 298 aaKnown RBP10.21□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms