RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 HLA-BQ31612 363 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 TDRD10Q5VZ19 366 aaKnown RBP12.33□□□□□ -0.44
RNF4-216ENST00000511859 CRELD2Q6UXH1 353 aaPredicted RBP12.33□□□□□ -0.44
RNF4-216ENST00000511859 OSTM1Q86WC4 334 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 MIB1Q86YT6 1006 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 ADGRF2Q8IZF7 708 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 CSGALNACT2Q8N6G5 542 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 ENGASEQ8NFI3 743 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 CDK5RAP3Q96JB5 506 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 SLITRK1Q96PX8 696 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 REEP2Q9BRK0 252 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 IL21RQ9HBE5 538 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 WSB2Q9NYS7 404 aaPredicted RBP12.33□□□□□ -0.44
RNF4-216ENST00000511859 CDH9Q9ULB4 789 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 SNX9Q9Y5X1 595 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 HECTD1Q9ULT8 2610 aa12.33□□□□□ -0.44
RNF4-216ENST00000511859 SCAMP3O14828 347 aaKnown RBP12.32□□□□□ -0.44
RNF4-216ENST00000511859 RRP8O43159 456 aaKnown RBP12.32□□□□□ -0.44
RNF4-216ENST00000511859 TFAMQ00059 246 aaKnown RBP12.32□□□□□ -0.44
RNF4-216ENST00000511859 TAF10Q12962 218 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 ANO4Q32M45 955 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 EGFLAMQ63HQ2 1017 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 LARP1BQ659C4 914 aaKnown RBP12.32□□□□□ -0.44
RNF4-216ENST00000511859 TMPRSS12Q86WS5 348 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 MARCH9Q86YJ5 346 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 ZCCHC9Q8N567 271 aaKnown RBP12.32□□□□□ -0.44
RNF4-216ENST00000511859 C1orf127Q8N9H9 656 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 POMGNT1Q8WZA1 660 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 PLIN2Q99541 437 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 MIR1-1HGQ9H1L0 117 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 ITM2CQ9NQX7 267 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 SPHK2Q9NRA0 654 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 ITGA11Q9UKX5 1188 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 FNDC3AQ9Y2H6 1198 aaKnown RBP12.32□□□□□ -0.44
RNF4-216ENST00000511859 SH3BP1Q9Y3L3 701 aa12.32□□□□□ -0.44
RNF4-216ENST00000511859 TEX51A0A1B0GUA7 166 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 FAM149AA5PLN7 773 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 GOLGA8CPA6NN73 597 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 CYSRT1A8MQ03 144 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 METTL12A8MUP2 240 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 ATP2C2O75185 946 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 NCAM1P13591 858 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 PLCG1P19174 1290 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 ITPKBP27987 946 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 OXTRP30559 389 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 ZNF132P52740 706 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 RBP5P82980 135 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 PTPRNQ16849 979 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 CCDC142Q17RM4 750 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 SOWAHAQ2M3V2 549 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 GRAMD4Q6IC98 578 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 TMEM25Q86YD3 366 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 SCFD1Q8WVM8 642 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 MYLPFQ96A32 169 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 TOE1Q96GM8 510 aaKnown RBP12.31□□□□□ -0.44
RNF4-216ENST00000511859 C8orf48Q96LL4 319 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 XPO6Q96QU8 1125 aaKnown RBP12.31□□□□□ -0.44
RNF4-216ENST00000511859 FIZ1Q96SL8 496 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 ACOX2Q99424 681 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 SYT15Q9BQS2 421 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 LLPHQ9BRT6 129 aaKnown RBP12.31□□□□□ -0.44
RNF4-216ENST00000511859 GPR174Q9BXC1 333 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 ST6GALNAC4Q9H4F1 302 aa12.31□□□□□ -0.44
RNF4-216ENST00000511859 SLC26A4O43511 780 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 LMO2P25791 158 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 ADSSP30520 456 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 GRK6P43250 576 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 BNC1Q01954 994 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 CYP27A1Q02318 531 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 CFHR1Q03591 330 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 MYO1EQ12965 1108 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 TMEM119Q4V9L6 283 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 C6orf118Q5T5N4 469 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 DCAF12L1Q5VU92 463 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 GPR155Q7Z3F1 870 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 GPBP1Q86WP2 473 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 PDZD8Q8NEN9 1154 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 CXorf38Q8TB03 319 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 OVCA2Q8WZ82 227 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 NXPE2Q96DL1 559 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 PCED1BQ96HM7 432 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 FCRL3Q96P31 734 aaPredicted RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 BACH2Q9BYV9 841 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 CD93Q9NPY3 652 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 CRTAC1Q9NQ79 661 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 USP36Q9P275 1121 aaKnown RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 R3HCC1Q9Y3T6 440 aaKnown RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 TISP43B9A030 160 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 F8VP50 259 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 PLK4O00444 970 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 TRIM24O15164 1050 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 HCRTO43612 131 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 LDHAP00338 332 aaKnown RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 KRT19P08727 400 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 CDK4P11802 303 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 PSMC1P62191 440 aaKnown RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 HECTD3Q5T447 861 aa12.3□□□□□ -0.44
RNF4-216ENST00000511859 KIAA1324Q6UXG2 1013 aaKnown RBP12.3□□□□□ -0.44
RNF4-216ENST00000511859 LIMS2Q7Z4I7 341 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms