RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 IGDCC3Q8IVU1 814 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 CTAGE3PQ8IX95 158 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 PALM2Q8IXS6 379 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 CCHCR1Q8TD31 782 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 APOL6Q9BWW8 343 aa17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 NGRNQ9NPE2 291 aaKnown RBP17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 FARP1Q9Y4F1 1045 aaPredicted RBP17.23■□□□□ 0.35
CCDC88B-210ENST00000494566 ALOX15BO15296 676 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 BGNP21810 368 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 PTDSS1P48651 473 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 NR1H3Q13133 447 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 PPP1R26Q5T8A7 1209 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 CFAP36Q96G28 342 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 PAFAH2Q99487 392 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 MRPL45Q9BRJ2 306 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 MIS12Q9H081 205 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 XPO7Q9UIA9 1087 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 HEY1Q9Y5J3 304 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 SNX9Q9Y5X1 595 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 DICER1Q9UPY3 1922 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 E2F8A0AVK6 867 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 TSPAN1O60635 241 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 TFE3P19532 575 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 SLC26A2P50443 739 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 GOLGA7BQ2TAP0 167 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 SCUBE3Q8IX30 993 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 EXOC8Q8IYI6 725 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 C10orf82Q8WW14 230 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 RAB3IPQ96QF0 476 aaPredicted RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 SLC13A1Q9BZW2 595 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 PIDD1Q9HB75 910 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 PIH1D1Q9NWS0 290 aaKnown RBP17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 NME7Q9Y5B8 376 aa17.22■□□□□ 0.35
CCDC88B-210ENST00000494566 DPPA5A6NC42 116 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 ABHD2P08910 425 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 MCF2P10911 925 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 CCNB1P14635 433 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 ALDH3A1P30838 453 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 PTPN7P35236 360 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 ATXN1P54253 815 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 YWHAGP61981 247 aaKnown RBP eCLIP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 MUM1Q2TAK8 710 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 PMF1Q6P1K2 205 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 DARS2Q6PI48 645 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 CYP4V2Q6ZWL3 525 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 NAT8LQ8N9F0 302 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 C18orf25Q96B23 403 aaPredicted RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 MCRS1Q96EZ8 462 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 CLPTM1LQ96KA5 538 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 ZMAT2Q96NC0 199 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 ZCWPW1Q9H0M4 648 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 MROH8Q9H579 483 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 CDHR5Q9HBB8 845 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 SETD4Q9NVD3 440 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 SNTG2Q9NY99 539 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 SHOC2Q9UQ13 582 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 PPME1Q9Y570 386 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 NR2E3Q9Y5X4 410 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 H3BRB1 525 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 NPTXRO95502 500 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 PFKMP08237 780 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 KPNB1Q14974 876 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 CA9Q16790 459 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 C9orf131Q5VYM1 1079 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 MTHFD1LQ6UB35 978 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 PPIL6Q8IXY8 311 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 SLC25A41Q8N5S1 370 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 FBXO27Q8NI29 283 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 SHKBP1Q8TBC3 707 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 DENND1AQ8TEH3 1009 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 ACAP3Q96P50 834 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 C16orf70Q9BSU1 422 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 TUT1Q9H6E5 874 aaKnown RBP17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 RNPEPL1Q9HAU8 725 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 TUBGCP4Q9UGJ1 667 aa17.21■□□□□ 0.35
CCDC88B-210ENST00000494566 TPBGLP0DKB5 382 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 RCN1Q15293 331 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 ALYREFQ86V81 257 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 C7orf31Q8N865 590 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 CLEC4CQ8WTT0 213 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 DDX50Q9BQ39 737 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 SHCBP1LQ9BZQ2 653 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 KANSL3Q9P2N6 904 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 RABGEF1Q9UJ41 708 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 BARX2Q9UMQ3 279 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 FAM237BA0A1B0GVD1 139 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 ASB14A6NK59 587 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 H7C0C1 242 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 MCF2LO15068 1137 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 F7P08709 466 aaPredicted RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 GPD1P21695 349 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 ATP5OP48047 213 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 BMPR2Q13873 1038 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 PDK4Q16654 411 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 ZNF484Q5JVG2 852 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 TTC25Q96NG3 672 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 CYTH2Q99418 400 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 EIF2AQ9BY44 585 aaKnown RBP17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 DPEP3Q9H4B8 488 aa17.2■□□□□ 0.34
CCDC88B-210ENST00000494566 ADCY6O43306 1168 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms