RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 UAP1L1Q3KQV9 507 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 ZNF667Q5HYK9 610 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 HECTD3Q5T447 861 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 CNNM4Q6P4Q7 775 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 PAQR9Q6ZVX9 377 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 ACOT1Q86TX2 421 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 BBS7Q8IWZ6 715 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 TMEFF1Q8IYR6 380 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 PGBD3Q8N328 593 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 CCDC26Q8TAB7 109 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 JAKMIP2Q96AA8 810 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 HMGXB4Q9UGU5 601 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 SH3BP1Q9Y3L3 701 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 FAM208BQ5VWN6 2430 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 ZFYVE26Q68DK2 2539 aa13.41□□□□□ -0.26
SKA1-205ENST00000494518 MAP3K13O43283 966 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 ADAM23O75077 832 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 BEST1O76090 585 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 VNN1O95497 513 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 STAU1O95793 577 aaKnown RBP13.4□□□□□ -0.26
SKA1-205ENST00000494518 SPINK2P20155 84 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 ATICP31939 592 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 KIR2DL1P43626 348 aaPredicted RBP13.4□□□□□ -0.26
SKA1-205ENST00000494518 DLG4P78352 724 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 IRX4P78413 519 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 ZNF252P-AS1Q0IIN9 211 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 FOXC1Q12948 553 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 NCOA4Q13772 614 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 ANO4Q32M45 955 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 SH3PXD2AQ5TCZ1 1133 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 SPOPLQ6IQ16 392 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 DDX42Q86XP3 938 aaKnown RBP eCLIP13.4□□□□□ -0.26
SKA1-205ENST00000494518 FUKQ8N0W3 1084 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 DEFB119Q8N690 84 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 PDZD8Q8NEN9 1154 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 WHAMMQ8TF30 809 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 SMARCD1Q96GM5 515 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 MS4A3Q96HJ5 214 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 NACA2Q9H009 215 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 POLMQ9NP87 494 aaPredicted RBP13.4□□□□□ -0.26
SKA1-205ENST00000494518 DMAP1Q9NPF5 467 aaPredicted RBP13.4□□□□□ -0.26
SKA1-205ENST00000494518 TMEM9BQ9NQ34 198 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 FSCN3Q9NQT6 498 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 FAM49BQ9NUQ9 324 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 FAM13BQ9NYF5 915 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 SERTAD1Q9UHV2 236 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 MBD1Q9UIS9 605 aaPredicted RBP13.4□□□□□ -0.26
SKA1-205ENST00000494518 RALYQ9UKM9 306 aaKnown RBP13.4□□□□□ -0.26
SKA1-205ENST00000494518 PCDHA7Q9UN72 937 aa13.4□□□□□ -0.26
SKA1-205ENST00000494518 WDFY3Q8IZQ1 3526 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 E2F8A0AVK6 867 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 TBC1D3BA6NDS4 549 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 TNFRSF10BO14763 440 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 TOP3BO95985 862 aaKnown RBP13.39□□□□□ -0.27
SKA1-205ENST00000494518 C4BPAP04003 597 aaKnown RBP13.39□□□□□ -0.27
SKA1-205ENST00000494518 ADORA2BP29275 332 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 P2RY2P41231 377 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 GRIA2P42262 883 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 PTGER3P43115 390 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 MAPK8P45983 427 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 MAP3K7CLP57077 242 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 SNRPFP62306 86 aaKnown RBP13.39□□□□□ -0.27
SKA1-205ENST00000494518 GAD2Q05329 585 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 EOGTQ5NDL2 527 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 DAB2IPQ5VWQ8 1189 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 RESP18Q5W5W9 173 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 C11orf74Q86VG3 221 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 TMEM25Q86YD3 366 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 C12orf56Q8IXR9 622 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 PHTF2Q8N3S3 785 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 C12orf29Q8N999 325 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 SPRYD3Q8NCJ5 442 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 KIAA0895Q8NCT3 520 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 ZMIZ2Q8NF64 920 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 OLIG1Q8TAK6 271 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 SLC2A14Q8TDB8 520 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 PARD3BQ8TEW8 1205 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 SPACA7Q96KW9 195 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 SMOQ99835 787 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 MAGEF1Q9HAY2 307 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 TBC1D14Q9P2M4 693 aa13.39□□□□□ -0.27
SKA1-205ENST00000494518 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.38□□□□□ -0.27
SKA1-205ENST00000494518 CDX4O14627 284 aaPredicted RBP13.38□□□□□ -0.27
SKA1-205ENST00000494518 MDM4O15151 490 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 ZZEF1O43149 2961 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 KLRC4O43908 158 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 TULP3O75386 442 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 TBX18O95935 607 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 F13A1P00488 732 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 FAM163BP0C2L3 166 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 EIF2DP41214 584 aaKnown RBP13.38□□□□□ -0.27
SKA1-205ENST00000494518 NDST1P52848 882 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 SHC2P98077 582 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 STK4Q13043 487 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 PKP1Q13835 747 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 MAP7D1Q3KQU3 841 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 TRIM61Q5EBN2 209 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 C10orf76Q5T2E6 689 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 BTBD8Q5XKL5 378 aa13.38□□□□□ -0.27
SKA1-205ENST00000494518 LPCAT2Q7L5N7 544 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms