RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	RPL9	P32969	192 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	NCKAP1L	P55160	1127 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	MARS	P56192	900 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	GABRE	P78334	506 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	OLR1	P78380	273 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CASP8	Q14790	479 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	RAB30	Q15771	203 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	PAN2	Q504Q3	1202 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	HERC4	Q5GLZ8	1057 aa	Predicted RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	PPP4R3CP	Q6ZMV5	832 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	RAPH1	Q70E73	1250 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	HAUS6	Q7Z4H7	955 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CCDC116	Q8IYX3	515 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ANKRD53	Q8N9V6	530 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	TMEM161B	Q8NDZ6	487 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	PTPRN2	Q92932	1015 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	EGLN2	Q96KS0	407 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	TUBA1C	Q9BQE3	449 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	MRPL44	Q9H9J2	332 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CNGB3	Q9NQW8	809 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CUEDC1	Q9NWM3	386 aa	Predicted RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CHMP2B	Q9UQN3	213 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	YBX2	Q9Y2T7	364 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	HEY1	Q9Y5J3	304 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	NUMBL	Q9Y6R0	609 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	LCHN	A4D1U4	455 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	KRBA1	A5PL33	1030 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	LACTBL1	A8MY62	500 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ACKR2	O00590	384 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ARHGAP33	O14559	1287 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ACSL4	O60488	711 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	LILRB3	O75022	631 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	N4BP1	O75113	896 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	SERPINB7	O75635	380 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ZMYND10	O75800	440 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ZNF202	O95125	648 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	OR5F1	O95221	314 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	FKBP9	O95302	570 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CA3	P07451	260 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	MAPT	P10636	758 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	FGFR1	P11362	822 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	GAP43	P17677	238 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	AXL	P30530	894 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	LSP1	P33241	339 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	MAPKAPK2	P49137	400 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	GATM	P50440	423 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	MRPS15	P82914	257 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	SKOR1	P84550	965 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	UBXN1	Q04323	297 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	COASY	Q13057	564 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	RNF187	Q5TA31	235 aa	Predicted RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	RTL10	Q7L3V2	364 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	ECHDC2	Q86YB7	292 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	OR7G1	Q8NGA0	311 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	LPP	Q93052	612 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	TIFA	Q96CG3	184 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	PGBD4	Q96DM1	585 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	NELL2	Q99435	816 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CIB1	Q99828	191 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	APOL6	Q9BWW8	343 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CARD6	Q9BX69	1037 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	MRPL4	Q9BYD3	311 aa	Known RBP	12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	CEP44	Q9C0F1	390 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	NKX2-4	Q9H2Z4	354 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	C8orf4	Q9NR00	106 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	TMEM161A	Q9NX61	479 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919	NOX1	Q9Y5S8	564 aa		12.09	□□□□□ -0.47
BRCA1-222	ENST00000493919		A0A0U1RQF3	1178 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	FAM170A	A1A519	330 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	OR5K4	A6NMS3	321 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919		H0YCG3	227 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	HNRNPR	O43390	633 aa	Known RBP	12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	TMCC2	O75069	709 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	GCNT3	O95395	438 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	EPB41	P11171	864 aa	Known RBP	12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	ZNF3	P17036	446 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	CDC25C	P30307	473 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	GSTT1	P30711	240 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	ADCY8	P40145	1251 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	AP3M2	P53677	418 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	FAM187B	Q17R55	369 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	ATF7IP2	Q5U623	682 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	SLC27A1	Q6PCB7	646 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	MAP7D3	Q8IWC1	876 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	HACE1	Q8IYU2	909 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	ABI1	Q8IZP0	508 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	FAM9C	Q8IZT9	166 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	OSCP1	Q8WVF1	389 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	STARD8	Q92502	1023 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	EFHD2	Q96C19	240 aa	Predicted RBP	12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	CCDC51	Q96ER9	411 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	PAGE5	Q96GU1	130 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	COG8	Q96MW5	612 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	RAD9A	Q99638	391 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	ADPGK	Q9BRR6	497 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	TARS2	Q9BW92	718 aa	Known RBP	12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	PDZD7	Q9H5P4	517 aa		12.08	□□□□□ -0.48
BRCA1-222	ENST00000493919	TMEM134	Q9H6X4	195 aa		12.08	□□□□□ -0.48

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