RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 TNFRSF10BO14763 440 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 KINO60870 393 aaKnown RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 RTN3O95197 1032 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 LMNAP02545 664 aaKnown RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 MBL2P11226 248 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 IFNAR2P48551 515 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 PGFP49763 221 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 MXI1P50539 228 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 GALK1P51570 392 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 SLC5A3P53794 718 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 SKOR1P84550 965 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 FKBP3Q00688 224 aaKnown RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 USP4Q13107 963 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 LRRC32Q14392 662 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 EML3Q32P44 896 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 CBWD6Q4V339 395 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 COBLL1Q53SF7 1204 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 CBWD3Q5JTY5 395 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 CBWD5Q5RIA9 395 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 PKN3Q6P5Z2 889 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 ZC3H14Q6PJT7 736 aaKnown RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 UNC93AQ86WB7 457 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 CCDC150Q8NCX0 1101 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 FBXL13Q8NEE6 735 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 WHAMMQ8TF30 809 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 OSCP1Q8WVF1 389 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 ATRIPQ8WXE1 791 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 CYFIP2Q96F07 1278 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 SMARCD1Q96GM5 515 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 MSANTD3Q96H12 275 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 SLITRK1Q96PX8 696 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 NT5C1AQ9BXI3 368 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 NIF3L1Q9GZT8 377 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 ECT2Q9H8V3 914 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 DMAP1Q9NPF5 467 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 POLR3BQ9NW08 1133 aaPredicted RBP11.29□□□□□ -0.6
COL6A3-214ENST00000493608 RAB20Q9NX57 234 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 GMIPQ9P107 970 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 ARHGAP26Q9UNA1 814 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 MYO16Q9Y6X6 1858 aa11.29□□□□□ -0.6
COL6A3-214ENST00000493608 OAS1P00973 400 aaKnown RBP11.28□□□□□ -0.6
COL6A3-214ENST00000493608 EGFP01133 1207 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 FAM200BP0CF97 657 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 BMP6P22004 513 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 GTF2H1P32780 548 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 GJA4P35212 333 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 CXCL12P48061 93 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 PPP3CCP48454 512 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 STX17P56962 302 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 ENPEPQ07075 957 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 DMWDQ09019 674 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 INCA1Q0VD86 236 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 STIM1Q13586 685 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 CCINQ13939 588 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 PDGFRLQ15198 375 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 ZNF528Q3MIS6 628 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 DGKKQ5KSL6 1271 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 HEATR6Q6AI08 1181 aaKnown RBP11.28□□□□□ -0.6
COL6A3-214ENST00000493608 FSTL4Q6MZW2 842 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 C1orf228Q6PIY5 440 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 GPRIN1Q7Z2K8 1008 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 DCLK2Q8N568 766 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 MRGPRX2Q96LB1 330 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 HEXIM2Q96MH2 286 aaKnown RBP11.28□□□□□ -0.6
COL6A3-214ENST00000493608 ARID3AQ99856 593 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 DUSP9Q99956 384 aaKnown RBP11.28□□□□□ -0.6
COL6A3-214ENST00000493608 CCSER2Q9H7U1 834 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 CYP3A43Q9HB55 503 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 PRMT8Q9NR22 394 aaPredicted RBP11.28□□□□□ -0.6
COL6A3-214ENST00000493608 ZSCAN32Q9NX65 697 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 CFAP97Q9P2B7 532 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 SDK1Q7Z5N4 2213 aa11.28□□□□□ -0.6
COL6A3-214ENST00000493608 CFAP54Q96N23 3096 aa11.27□□□□□ -0.6
COL6A3-214ENST00000493608 TRDMT1O14717 391 aaKnown RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 PSMA7O14818 248 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 SLC16A3O15427 465 aaKnown RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 COCHO43405 550 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 STX10O60499 249 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CILPO75339 1184 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 TBX18O95935 607 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 TDGF1P13385 188 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CCR3P51677 355 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 MCCD1P59942 119 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 SLC7A9P82251 487 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 LRRC63Q05C16 580 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 GRSF1Q12849 480 aaKnown RBP eCLIP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 LRMPQ12912 555 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 TMEM196Q5HYL7 178 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 HECTD3Q5T447 861 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 PPP1R26Q5T8A7 1209 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CLEC20AQ6ZU45 233 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 FILIP1Q7Z7B0 1213 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 ZC3H3Q8IXZ2 948 aaKnown RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 ELOA2Q8IYF1 753 aaPredicted RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 SPEM1Q8N4L4 309 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 CPA6Q8N4T0 437 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 SUMF1Q8NBK3 374 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 SNIP1Q8TAD8 396 aaKnown RBP11.27□□□□□ -0.61
COL6A3-214ENST00000493608 NELFBQ8WX92 580 aa11.27□□□□□ -0.61
COL6A3-214ENST00000493608 ATP2A3Q93084 1043 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms