RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 BLZF1Q9H2G9 400 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 DPEP3Q9H4B8 488 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 KRT82Q9NSB4 513 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 RALGAPA1Q6GYQ0 2036 aa12.26□□□□□ -0.45
COL6A3-213ENST00000493475 DENND4CQ5VZ89 1909 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SPAG17Q6Q759 2223 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 C4orf47A7E2U8 309 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 IKBKBO14920 756 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 DCLK1O15075 740 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 HOXC11O43248 304 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-213ENST00000493475 COCHO43405 550 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF217O75362 1048 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SLFN14P0C7P3 912 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 FAM200BP0CF97 657 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 KRT13P13646 458 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 RPL13P26373 211 aaKnown RBP12.25□□□□□ -0.45
COL6A3-213ENST00000493475 HOXD13P35453 343 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 PIK3CAP42336 1068 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SLC8A3P57103 927 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 KDSRQ06136 332 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 LY6G5CQ5SRR4 150 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 N4BP2L1Q5TBK1 243 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-213ENST00000493475 RESP18Q5W5W9 173 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 LYSMD4Q5XG99 296 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 NAIF1Q69YI7 327 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-213ENST00000493475 RHBDF2Q6PJF5 856 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SCARA5Q6ZMJ2 495 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SYT12Q8IV01 421 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SLC9A9Q8IVB4 645 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 TTC39CQ8N584 583 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 CEP76Q8TAP6 659 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 PARD3BQ8TEW8 1205 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 HMGB4Q8WW32 186 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 PIGKQ92643 395 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 XYLT2Q9H1B5 865 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 SMYD3Q9H7B4 428 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 WDR35Q9P2L0 1181 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 EVLQ9UI08 416 aaPredicted RBP12.25□□□□□ -0.45
COL6A3-213ENST00000493475 GREB1Q4ZG55 1949 aa12.25□□□□□ -0.45
COL6A3-213ENST00000493475 CNOT1A5YKK6 2376 aaKnown RBP12.25□□□□□ -0.45
COL6A3-213ENST00000493475 A0A0A0MRY4 1105 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 TCRBV21S2A2A0A5A6 115 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 LNP1A1A4G5 178 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CLDN5O00501 218 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 PDXKO00764 312 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 TM4SF5O14894 197 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 TLR5O60602 858 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 OBSL1O75147 1896 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 F13A1P00488 732 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CEACAM1P13688 526 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CSRP1P21291 193 aaKnown RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 PMLP29590 882 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 ATP5C1P36542 298 aaKnown RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 P2RY2P41231 377 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CLDN10P78369 228 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 EHHADHQ08426 723 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 FOXD4L6Q3SYB3 417 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 C10orf76Q5T2E6 689 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 FOXD4L5Q5VV16 416 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CEP135Q66GS9 1140 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 GRAMD4Q6IC98 578 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 FOXD4L3Q6VB84 417 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 INTS8Q75QN2 995 aaKnown RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 HDDC3Q8N4P3 179 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF513Q8N8E2 541 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 IL17RCQ8NAC3 791 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 TMC2Q8TDI7 906 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 TMEM174Q8WUU8 243 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 FOXD4L4Q8WXT5 416 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 EZH1Q92800 747 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 SNX21Q969T3 373 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CEP295Q9C0D2 2601 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 SMOC1Q9H4F8 434 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 PNPLA8Q9NP80 782 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 SPHK2Q9NRA0 654 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 CHORDC1Q9UHD1 332 aaPredicted RBP12.24□□□□□ -0.45
COL6A3-213ENST00000493475 INVSQ9Y283 1065 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 PCDHA5Q9Y5H7 936 aa12.24□□□□□ -0.45
COL6A3-213ENST00000493475 LRRIQ3A6PVS8 624 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-213ENST00000493475 NR3C1P04150 777 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 IRF1P10914 325 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 RALAP11233 206 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 HOXB2P14652 356 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 MAP3K7CLP57077 242 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 ZNF252P-AS1Q0IIN9 211 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 CUL4BQ13620 913 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 TRIM61Q5EBN2 209 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 TCEAL6Q6IPX3 200 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 ACOT1Q86TX2 421 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 CHPFQ8IZ52 775 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 TERB1Q8NA31 727 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 OLIG1Q8TAK6 271 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 SLC2A14Q8TDB8 520 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 TCEAL3Q969E4 200 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 KCNK16Q96T55 309 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 NT5C1AQ9BXI3 368 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 BACH2Q9BYV9 841 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 CYP3A43Q9HB55 503 aa12.23□□□□□ -0.45
COL6A3-213ENST00000493475 POLR3BQ9NW08 1133 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-213ENST00000493475 GMIPQ9P107 970 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms