RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ANKRD65E5RJM6 399 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 PGK1P00558 417 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 DRD4P21917 467 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 NRLP54845 237 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 CORO7P57737 925 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 SREBF2Q12772 1141 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 SLC9A4Q6AI14 798 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 ZNF317Q96PQ6 595 aaPredicted RBP22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 ARHGAP39Q9C0H5 1083 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 UPF3AQ9H1J1 476 aaKnown RBP22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 TBK1Q9UHD2 729 aa22.01■■□□□ 1.11
CCDC88B-208ENST00000492980 CYB561D2O14569 222 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 APOL1O14791 398 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 BANF1O75531 89 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 TGM2P21980 687 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 GCAP28676 217 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 STIP1P31948 543 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 RDXP35241 583 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 CCDC13Q8IYE1 715 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 RIBC1Q8N443 379 aaPredicted RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 TAB3Q8N5C8 712 aaPredicted RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 PCDH19Q8TAB3 1148 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 FAF2Q96CS3 445 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 HNRNPABQ99729 332 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 PRMT1Q99873 361 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 ZNF670Q9BS34 389 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 ATXN2Q99700 1313 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 EXOC1LA0A1B0GW35 172 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 TCRBV7S3A2A0A539 114 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 TMEM120BA0PK00 339 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 XPO1O14980 1071 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 ATP2C2O75185 946 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 TMEM63AO94886 807 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 IGFBP6P24592 240 aaPredicted RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 ARL4CP56559 192 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 FNBP1LQ5T0N5 605 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 FUKQ8N0W3 1084 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 GSTCDQ8NEC7 633 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 SENP6Q9GZR1 1112 aaPredicted RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 FAM105AQ9NUU6 356 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 DDX20Q9UHI6 824 aaKnown RBP22■■□□□ 1.11
CCDC88B-208ENST00000492980 GGA2Q9UJY4 613 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 GABRQQ9UN88 632 aa22■■□□□ 1.11
CCDC88B-208ENST00000492980 CTSHP09668 335 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 ATXN1P54253 815 aaKnown RBP21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 MSS51Q4VC12 460 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 MFSD14CQ5VZR4 134 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 WSCD1Q658N2 575 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 RSPH3Q86UC2 560 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 ANKMY2Q8IV38 441 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 VPS37BQ9H9H4 285 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 CACNG4Q9UBN1 327 aa21.99■■□□□ 1.11
CCDC88B-208ENST00000492980 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 ZNF487B1APH4 448 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 H7C0C1 242 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 SMAPO00193 183 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 CAPN15O75808 1086 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 CHRNA1P02708 482 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 RARBP10826 455 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 ACAT1P24752 427 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 MLH1P40692 756 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 ATP5OP48047 213 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 DPYSL2Q16555 572 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 PIGZQ86VD9 579 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 TDRPQ86YL5 185 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 MAML1Q92585 1016 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 DUSP16Q9BY84 665 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 TSPYL2Q9H2G4 693 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 USP29Q9HBJ7 922 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 UBN1Q9NPG3 1134 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 CLUHO75153 1309 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 E7ESA3 106 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 GABRDO14764 452 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 FAM163BP0C2L3 166 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 PTPN1P18031 435 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 FCGRTP55899 365 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 BCAR1P56945 870 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 GPX6P59796 221 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 CAPN12Q6ZSI9 719 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 MICALCLQ6ZW33 695 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 SERINC5Q86VE9 423 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 ZIC5Q96T25 663 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 WDR83Q9BRX9 315 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 SLC38A7Q9NVC3 462 aa21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 XPO7Q9UIA9 1087 aaKnown RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 ZMYND8Q9ULU4 1186 aaPredicted RBP21.98■■□□□ 1.11
CCDC88B-208ENST00000492980 CA12O43570 354 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 BRAFP15056 766 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 L1CAMP32004 1257 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 BASP1P80723 227 aaKnown RBP21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 TMED2Q15363 201 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 PPP6R3Q5H9R7 873 aaPredicted RBP21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 PAQR9Q6ZVX9 377 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 CPLX4Q7Z7G2 160 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 TADA2BQ86TJ2 420 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 GAD1Q99259 594 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 CHST12Q9NRB3 414 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 HEY1Q9Y5J3 304 aa21.97■■□□□ 1.11
CCDC88B-208ENST00000492980 ACTL7BQ9Y614 415 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms