RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 GRK4P32298 578 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 NUP62P37198 522 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 BOP1Q14137 746 aaKnown RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 NBPF9Q3BBW0 867 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TFAP2DQ7Z6R9 452 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 ZNF34Q8IZ26 560 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 OSCP1Q8WVF1 389 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 THAP11Q96EK4 314 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 VPS33BQ9H267 617 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 PARVBQ9HBI1 364 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 PCDHB9Q9Y5E1 797 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 RPS6KL1Q9Y6S9 549 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 MYPNQ86TC9 1320 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 IQSEC2Q5JU85 1478 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 FOXP2O15409 715 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 TKTL1P51854 596 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 GEMIN4P57678 1058 aaKnown RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 NFE2Q16621 373 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 FBXO2Q9UK22 296 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 OPLAHO14841 1288 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 GLP2RO95838 553 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 BOLA3Q53S33 107 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 CBWD3Q5JTY5 395 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 CBWD5Q5RIA9 395 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 PPIL6Q8IXY8 311 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 KCNK16Q96T55 309 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 MRPL9Q9BYD2 267 aaKnown RBP13.55□□□□□ -0.24
COL6A3-212ENST00000491769 PHACTR1Q9C0D0 580 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 HPS5Q9UPZ3 1129 aa13.55□□□□□ -0.24
COL6A3-212ENST00000491769 HECW2Q9P2P5 1572 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 MOXD2PA6NHM9 499 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 TBC1D12O60347 775 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CCNT2O60583 730 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 UMPSP11172 480 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 MAGEA4P43358 317 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 GLRBP48167 497 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 NDUFV1P49821 464 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 RAB27AP51159 221 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ITPK1Q13572 414 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 TLK2Q86UE8 772 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 LONP2Q86WA8 852 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 FAM172AQ8WUF8 416 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 EDEM1Q92611 657 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 BPIFA3Q9BQP9 254 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 THTPAQ9BU02 230 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 YIPF3Q9GZM5 350 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ELOVL6Q9H5J4 265 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 NEUROD4Q9HD90 331 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CDY2AQ9Y6F7 541 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CDY1Q9Y6F8 540 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 KLHL2O95198 593 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CNPP09543 421 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CYP2A7P20853 494 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 JAK1P23458 1154 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 NAMPTP43490 491 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 SETD3Q86TU7 594 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 SOCS4Q8WXH5 440 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 NACC2Q96BF6 587 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ACOX2Q99424 681 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 GAS2L1Q99501 681 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CCSER1Q9C0I3 900 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 PDGFDQ9GZP0 370 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 FAM50BQ9Y247 325 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 MRPL42Q9Y6G3 142 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ADM5C9JUS6 153 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 SPAG6O75602 509 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 FBXO21O94952 628 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CCNG1P51959 295 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ITGA8P53708 1063 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 PTAR1Q7Z6K3 402 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 COLGALT2Q8IYK4 626 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 CLIP3Q96DZ5 547 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 TRIT1Q9H3H1 467 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 SMIM22K7EJ46 135 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 PRPF39Q86UA1 669 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 GATAD2AQ86YP4 633 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 UXTQ9UBK9 157 aaPredicted RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 SNCAIPQ9Y6H5 919 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 H3BRB1 525 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 NFIBO00712 420 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ZNF682O95780 498 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 C21orf59P57076 290 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 TBX4P57082 545 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 DNAL1Q4LDG9 190 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 SNX30Q5VWJ9 437 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 RETSATQ6NUM9 610 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 MACC1Q6ZN28 852 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ATG9AQ7Z3C6 839 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 OLFM3Q96PB7 478 aa13.54□□□□□ -0.24
COL6A3-212ENST00000491769 ZCCHC2Q9C0B9 1178 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 TUT1Q9H6E5 874 aaKnown RBP13.54□□□□□ -0.24
COL6A3-212ENST00000491769 LOC100653049A0A140TA62 436 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 RBAK-RBAKDNI3L0D1 243 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 SLC26A4O43511 780 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ACSL4O60488 711 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 KRT34O76011 436 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 CYP2A6P11509 494 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-212ENST00000491769 ATAD3BQ5T9A4 648 aa13.53□□□□□ -0.24
COL6A3-212ENST00000491769 FBXL19Q6PCT2 694 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms