RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 DUSP15Q9H1R2 295 aaPredicted RBP14.44□□□□□ -0.1
COL6A3-211ENST00000491233 GOLPH3LQ9H4A5 285 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 SMOC1Q9H4F8 434 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 MMRN2Q9H8L6 949 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 CSNK1G1Q9HCP0 422 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 ARHGEF4Q9NR80 690 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 COMMD8Q9NX08 183 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 EBF1Q9UH73 591 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 PCDHGA5Q9Y5G8 931 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 PLXND1Q9Y4D7 1925 aa14.44□□□□□ -0.1
COL6A3-211ENST00000491233 TNRC6BQ9UPQ9 1833 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 NCOR2Q9Y618 2525 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 A0A1W2PQ27 194 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 A0A1W2PQ64 194 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 A0A1W2PQD8 194 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 KAT7O95251 611 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 ZNF806P0C7X5 589 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 FAM200BP0CF97 657 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 IRF1P10914 325 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 KRT13P13646 458 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 TRIM21P19474 475 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 GBP1P32455 592 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 PGFP49763 221 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 MRPS21P82921 87 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 PPP3CAQ08209 521 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 INCA1Q0VD86 236 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 PPM1JQ5JR12 505 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 LY6G5CQ5SRR4 150 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 INTS8Q75QN2 995 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 GPRIN1Q7Z2K8 1008 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 BBS7Q8IWZ6 715 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 GUF1Q8N442 669 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 WBP2Q969T9 261 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 OTUB2Q96DC9 234 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 CNOT6LQ96LI5 555 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 NIF3L1Q9GZT8 377 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 SCAND2PQ9GZW5 306 aaPredicted RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 APOBEC3GQ9HC16 384 aaKnown RBP14.43□□□□□ -0.1
COL6A3-211ENST00000491233 RXFP3Q9NSD7 469 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 INVSQ9Y283 1065 aa14.43□□□□□ -0.1
COL6A3-211ENST00000491233 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.42□□□□□ -0.1
COL6A3-211ENST00000491233 TLR5O60602 858 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 CHRM1P11229 460 aaPredicted RBP14.42□□□□□ -0.1
COL6A3-211ENST00000491233 HNRNPLP14866 589 aaKnown RBP eCLIP14.42□□□□□ -0.1
COL6A3-211ENST00000491233 CD58P19256 250 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 KCNA4P22459 653 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 TIE1P35590 1138 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 GAD2Q05329 585 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 CRY1Q16526 586 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 ZCWPW2Q504Y3 356 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 PLA2G2CQ5R387 149 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 CLEC20AQ6ZU45 233 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 RASSF3Q86WH2 238 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 TTC30AQ86WT1 665 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 ALLCQ8N6M5 410 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 MDGA1Q8NFP4 955 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 HNRNPABQ99729 332 aaKnown RBP14.42□□□□□ -0.1
COL6A3-211ENST00000491233 NT5C1AQ9BXI3 368 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 FBXO44Q9H4M3 255 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 CYP3A43Q9HB55 503 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 GDPD2Q9HCC8 539 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 ZDHHC4Q9NPG8 344 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 TLR8Q9NR97 1041 aaKnown RBP14.42□□□□□ -0.1
COL6A3-211ENST00000491233 ATP6V1DQ9Y5K8 247 aa14.42□□□□□ -0.1
COL6A3-211ENST00000491233 MYO18AQ92614 2054 aaKnown RBP14.42□□□□□ -0.1
COL6A3-211ENST00000491233 ABCA7Q8IZY2 2146 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 CYP26A1O43174 497 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 HOXC11O43248 304 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-211ENST00000491233 RHOBTB1O94844 696 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 ZNF202O95125 648 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 KLF8O95600 359 aaPredicted RBP14.41□□□□□ -0.1
COL6A3-211ENST00000491233 RPL13P26373 211 aaKnown RBP14.41□□□□□ -0.1
COL6A3-211ENST00000491233 PSMC2P35998 433 aaKnown RBP14.41□□□□□ -0.1
COL6A3-211ENST00000491233 GRIA2P42262 883 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 LIMK1P53667 647 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 CREB5Q02930 508 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 ENPEPQ07075 957 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 IL31Q6EBC2 164 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 TCEAL6Q6IPX3 200 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 TMEM92Q6UXU6 159 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 ETFBKMTQ8IXQ9 262 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 PHTF2Q8N3S3 785 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 IL17RCQ8NAC3 791 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 TXNDC5Q8NBS9 432 aaKnown RBP14.41□□□□□ -0.1
COL6A3-211ENST00000491233 TCEAL3Q969E4 200 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 CYFIP2Q96F07 1278 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 DUSP9Q99956 384 aaKnown RBP14.41□□□□□ -0.1
COL6A3-211ENST00000491233 TMEM8AQ9HCN3 771 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 VPS45Q9NRW7 570 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 SPTBN2O15020 2390 aa14.41□□□□□ -0.1
COL6A3-211ENST00000491233 HHLA1C9JL84 531 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 SGK1O00141 431 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 CILPO75339 1184 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 TULP3O75386 442 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 ADRB1P08588 477 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 ACO1P21399 889 aaKnown RBP14.4□□□□□ -0.1
COL6A3-211ENST00000491233 BCKDHBP21953 392 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 KIR2DL1P43626 348 aaPredicted RBP14.4□□□□□ -0.1
COL6A3-211ENST00000491233 ADAM9Q13443 819 aa14.4□□□□□ -0.1
COL6A3-211ENST00000491233 ANO4Q32M45 955 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms