RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 ANO4Q32M45 955 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 APOBEC3HQ6NTF7 200 aaKnown RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 MTHFD1LQ6UB35 978 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 C16orf89Q6UX73 402 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 BNC2Q6ZN30 1099 aaPredicted RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 NET1Q7Z628 596 aaPredicted RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 SLC9A9Q8IVB4 645 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 NUP93Q8N1F7 819 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CERS5Q8N5B7 392 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 SEC14L1Q92503 715 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CCDC97Q96F63 343 aaPredicted RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 BTBD7Q9P203 1132 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 LRRC42Q9Y546 428 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 SCNN1BP51168 640 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 GAD2Q05329 585 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 MGAT5Q09328 741 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 TBCCQ15814 346 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 FAM47CQ5HY64 1035 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 SNX32Q86XE0 403 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 ZDHHC14Q8IZN3 488 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 IL31RAQ8NI17 732 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 ZNF398Q8TD17 642 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 EPB41L4BQ9H329 900 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 EBF3Q9H4W6 596 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 TBC1D23Q9NUY8 699 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CAMTA1Q9Y6Y1 1673 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 PRKCBP05771 671 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CPA3P15088 417 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 ITGB5P18084 799 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 GPD1P21695 349 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 MAP4P27816 1152 aaKnown RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 RBL1P28749 1068 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 MIPP30301 263 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 AVPR1AP37288 418 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CHN2P52757 468 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CYP1B1Q16678 543 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 LPCAT2Q7L5N7 544 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 RNPEPQ9H4A4 650 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 COL1A1P02452 1464 aaPredicted RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CSPG5O95196 566 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 FAM58BPP0C7Q3 252 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CLK2P49760 499 aaKnown RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 TUBP50607 506 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 GALK1P51570 392 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 GALNTL6Q49A17 601 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 RWDD4Q6NW29 188 aaKnown RBP13.28□□□□□ -0.28
SHOX2-205ENST00000490689 HPS6Q86YV9 775 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 NETO2Q8NC67 525 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 HELQQ8TDG4 1101 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 CATSPER2Q96P56 530 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 AAASQ9NRG9 546 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 WDR35Q9P2L0 1181 aa13.28□□□□□ -0.28
SHOX2-205ENST00000490689 SPATA31A1Q5TZJ5 1347 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 MED1Q15648 1581 aaPredicted RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 ABLIM1O14639 778 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 STRNO43815 780 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 ZC3H11AO75152 810 aaKnown RBP eCLIP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 SNRPFP62306 86 aaKnown RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 NOMO3P69849 1222 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 CYP2R1Q6VVX0 501 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 MYLK4Q86YV6 388 aaPredicted RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 PIWIL2Q8TC59 973 aaKnown RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 RXFP2Q8WXD0 754 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 FAM163AQ96GL9 167 aaPredicted RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 NR1H4Q96RI1 486 aaPredicted RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 EPAS1Q99814 870 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 GCOM2Q9BZD3 368 aaPredicted RBP13.27□□□□□ -0.28
SHOX2-205ENST00000490689 SNX25Q9H3E2 840 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 SSX2IPQ9Y2D8 614 aa13.27□□□□□ -0.28
SHOX2-205ENST00000490689 GLRA3O75311 464 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 SNHG28P0DPA3 235 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 POLD1P28340 1107 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 ALDH1A3P47895 512 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 NME5P56597 212 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 USP46P62068 366 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 FOLH1Q04609 750 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 GSTA3Q16772 222 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 RALGPS1Q5JS13 557 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 KLC3Q6P597 504 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 TTC33Q6PID6 262 aaPredicted RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 USP33Q8TEY7 942 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 MARK4Q96L34 752 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 PAIP1Q9H074 479 aaKnown RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 ILKAPQ9H0C8 392 aaPredicted RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 ADNPQ9H2P0 1102 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 AGO4Q9HCK5 861 aaKnown RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 COMMD3-BMI1R4GMX3 469 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 hCG_1818297A0A087WSY0 165 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 PDGFRBP09619 1106 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 TCF4P15884 667 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 GARTP22102 1010 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 PEX2P28328 305 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 ABCD1P33897 745 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 TMED10P49755 219 aaKnown RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 SATL1Q86VE3 508 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 RPAP3Q9H6T3 665 aaPredicted RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 WRAP73Q9P2S5 460 aaPredicted RBP13.27□□□□□ -0.29
SHOX2-205ENST00000490689 PRKAG3Q9UGI9 489 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 NUB1Q9Y5A7 615 aa13.27□□□□□ -0.29
SHOX2-205ENST00000490689 SNX9Q9Y5X1 595 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms