RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TIMP4Q99727 224 aa6.31□□□□□ -1.4
USP48-209ENST00000487880 CRB3Q9BUF7 120 aa6.31□□□□□ -1.4
USP48-209ENST00000487880 FSD1LQ9BXM9 530 aa6.31□□□□□ -1.4
USP48-209ENST00000487880 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.31□□□□□ -1.42e-37■□□□□ 8.4
USP48-209ENST00000487880 TMEM8AQ9HCN3 771 aa6.31□□□□□ -1.4
USP48-209ENST00000487880 LRCH1Q9Y2L9 728 aa6.31□□□□□ -1.4
USP48-209ENST00000487880 SLC27A6Q9Y2P4 619 aa6.31□□□□□ -1.4
USP48-209ENST00000487880 CBFA2T3O75081 653 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 COQ9O75208 318 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 EBLN1P0CF75 366 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 WT1P19544 449 aaPredicted RBP6.3□□□□□ -1.4
USP48-209ENST00000487880 DRD4P21917 467 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 GKP32189 559 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 CYP2C18P33260 490 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 CCT8P50990 548 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 TNFAIP2Q03169 654 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 GPS1Q13098 491 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 STARD3Q14849 445 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 ERCC6LQ2NKX8 1250 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 ZNF362Q5T0B9 420 aaPredicted RBP6.3□□□□□ -1.4
USP48-209ENST00000487880 TMTC4Q5T4D3 741 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 FBXO38Q6PIJ6 1188 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 PARS2Q7L3T8 475 aaKnown RBP6.3□□□□□ -1.4
USP48-209ENST00000487880 GRASPQ7Z6J2 395 aaPredicted RBP6.3□□□□□ -1.4
USP48-209ENST00000487880 LRRC71Q8N4P6 559 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 HAPLN3Q96S86 360 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 THAP7Q9BT49 309 aaPredicted RBP6.3□□□□□ -1.4
USP48-209ENST00000487880 KRTAP17-1Q9BYP8 105 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 TMOD4Q9NZQ9 345 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 SLC17A6Q9P2U8 582 aa6.3□□□□□ -1.4
USP48-209ENST00000487880 EXOC5O00471 708 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 SPRY2O43597 315 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 SNX2O60749 519 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 PMPCBO75439 489 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 DLDP09622 509 aaKnown RBP6.29□□□□□ -1.4
USP48-209ENST00000487880 PECAM1P16284 738 aaPredicted RBP6.29□□□□□ -1.4
USP48-209ENST00000487880 CLK3P49761 638 aaKnown RBP6.29□□□□□ -1.4
USP48-209ENST00000487880 PDE1AP54750 535 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 E2F1Q01094 437 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 NSUN2Q08J23 767 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP48-209ENST00000487880 ATP1A4Q13733 1029 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 AARS2Q5JTZ9 985 aaKnown RBP6.29□□□□□ -1.4
USP48-209ENST00000487880 C10orf62Q5T681 223 aaPredicted RBP6.29□□□□□ -1.4
USP48-209ENST00000487880 ARL6IP4Q66PJ3 421 aaKnown RBP6.29□□□□□ -1.4
USP48-209ENST00000487880 MTHFD1LQ6UB35 978 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 SUN3Q8TAQ9 357 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 CAGE1Q8TC20 777 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 POF1BQ8WVV4 589 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 TBC1D5Q92609 795 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 UROC1Q96N76 676 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 DUSP26Q9BV47 211 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 PRDM13Q9H4Q3 707 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 TLK1Q9UKI8 766 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 ST3GAL5Q9UNP4 418 aa6.29□□□□□ -1.4
USP48-209ENST00000487880 GOLGA6L3A6NEY3 463 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 A8MVJ9 347 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 PSMD9O00233 223 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 ZNF213O14771 459 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 KIAA0355O15063 1070 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 FFAR2O15552 330 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 DHHO43323 396 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 NDUFB7P17568 137 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 EEFSECP57772 596 aaKnown RBP6.28□□□□□ -1.4
USP48-209ENST00000487880 MTAPQ13126 283 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 CLEC9AQ6UXN8 241 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 C11orf44Q8N8P7 122 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 ENAHQ8N8S7 591 aaPredicted RBP6.28□□□□□ -1.4
USP48-209ENST00000487880 VPS37AQ8NEZ2 397 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 IPO4Q8TEX9 1081 aaKnown RBP6.28□□□□□ -1.4
USP48-209ENST00000487880 ABHD5Q8WTS1 349 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 MUL1Q969V5 352 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 LENG8Q96PV6 779 aaPredicted RBP6.28□□□□□ -1.4
USP48-209ENST00000487880 DPCDQ9BVM2 203 aaPredicted RBP6.28□□□□□ -1.4
USP48-209ENST00000487880 IGSF9Q9P2J2 1179 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 STEAP1Q9UHE8 339 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 CA14Q9ULX7 337 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 ADAMTS5Q9UNA0 930 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 DTNAQ9Y4J8 743 aa6.28□□□□□ -1.4
USP48-209ENST00000487880 CCNT2O60583 730 aaKnown RBP6.27□□□□□ -1.41
USP48-209ENST00000487880 CD19P15391 556 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 ENGP17813 658 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 PDIA3P30101 505 aaKnown RBP6.27□□□□□ -1.41
USP48-209ENST00000487880 SOX10P56693 466 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 GALNT1Q10472 559 aaPredicted RBP6.27□□□□□ -1.41
USP48-209ENST00000487880 CHAF1AQ13111 956 aaPredicted RBP6.27□□□□□ -1.41
USP48-209ENST00000487880 ACOX1Q15067 660 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 ST3GAL2Q16842 350 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 ARHGAP15Q53QZ3 475 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 FAM83BQ5T0W9 1011 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 FAM98AQ8NCA5 519 aaKnown RBP6.27□□□□□ -1.41
USP48-209ENST00000487880 ABHD11Q8NFV4 315 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 ARPC5LQ9BPX5 153 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 MRIQ9BWK5 157 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 IL17RBQ9NRM6 502 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 NKX1-2Q9UD57 310 aaPredicted RBP6.27□□□□□ -1.41
USP48-209ENST00000487880 ADAM21Q9UKJ8 722 aa6.27□□□□□ -1.41
USP48-209ENST00000487880 F5H423 210 aaPredicted RBP6.26□□□□□ -1.41
USP48-209ENST00000487880 AP4M1O00189 453 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 QSOX1O00391 747 aa6.26□□□□□ -1.41
USP48-209ENST00000487880 PCDH17O14917 1159 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms