RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 KIF11P52732 1056 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 YWHAEP62258 255 aaKnown RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 ZXDBP98169 803 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 MTAPQ13126 283 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 MTF1Q14872 753 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 EML3Q32P44 896 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 CT47A1Q5JQC4 288 aaPredicted RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 HECTD3Q5T447 861 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 ARHGAP17Q68EM7 881 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 SPOPLQ6IQ16 392 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 CC2D1AQ6P1N0 951 aaPredicted RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 KLHDC10Q6PID8 442 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 TXNDC11Q6PKC3 985 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 NUDT18Q6ZVK8 323 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 GPIHBP1Q8IV16 184 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 C12orf29Q8N999 325 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 CCDC26Q8TAB7 109 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 SCAMP5Q8TAC9 235 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 LMO3Q8TAP4 145 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 RIN3Q8TB24 985 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 SLC2A14Q8TDB8 520 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 SH3RF2Q8TEC5 729 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 ERCC4Q92889 916 aaPredicted RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 ATP2A3Q93084 1043 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 NKD2Q969F2 451 aaPredicted RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 JAKMIP2Q96AA8 810 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 TMEM176AQ96HP8 235 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 ZFYVE19Q96K21 471 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 MED10Q9BTT4 135 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 SMG9Q9H0W8 520 aaKnown RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 LINC00597Q9H2U6 94 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 SPATA6Q9NWH7 488 aaPredicted RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 ZSCAN32Q9NX65 697 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 DUS2Q9NX74 493 aaKnown RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 TBC1D14Q9P2M4 693 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 CHORDC1Q9UHD1 332 aaPredicted RBP7.41□□□□□ -1.22
VPS50-218ENST00000485994 SCML2Q9UQR0 700 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 USP3Q9Y6I4 520 aa7.41□□□□□ -1.22
VPS50-218ENST00000485994 PRR23AA6NEV1 266 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 OTOL1A6NHN0 477 aaPredicted RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 LEFTY2O00292 366 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 ATG13O75143 517 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 NFATC1O95644 943 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CKMP06732 381 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 FAM200BP0CF97 657 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CNR2P34972 360 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 GJA4P35212 333 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 EIF2DP41214 584 aaKnown RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 FMO5P49326 533 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 GALK1P51570 392 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 SLC5A3P53794 718 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 RAD23BP54727 409 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CSTF1Q05048 431 aaKnown RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 TNK2Q07912 1038 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CETN1Q12798 172 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 GRSF1Q12849 480 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS50-218ENST00000485994 GAS6Q14393 721 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CBWD6Q4V339 395 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 RAB41Q5JT25 222 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CBWD3Q5JTY5 395 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CBWD5Q5RIA9 395 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 PPP1R26Q5T8A7 1209 aaPredicted RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 LCE2AQ5TA79 106 aaPredicted RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 PM20D1Q6GTS8 502 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 SCARA5Q6ZMJ2 495 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CLEC20AQ6ZU45 233 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 HTR3DQ70Z44 454 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 ASCL5Q7RTU5 278 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CCDC186Q7Z3E2 898 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 TRIM59Q8IWR1 403 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 SCML4Q8N228 414 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CPA6Q8N4T0 437 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 UBR7Q8N806 425 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 ANKRD52Q8NB46 1076 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 SLC4A11Q8NBS3 891 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 EHBP1Q8NDI1 1231 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 NELFBQ8WX92 580 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 FBXO32Q969P5 355 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CHFRQ96EP1 664 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 EEF2KMTQ96G04 330 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 HEXIM2Q96MH2 286 aaKnown RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 TWNKQ96RR1 684 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 EBF3Q9H4W6 596 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 TRPC7Q9HCX4 862 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CYLDQ9NQC7 956 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 TLR8Q9NR97 1041 aaKnown RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 CISHQ9NSE2 258 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 FAM86C1Q9NVL1 165 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 CLIC5Q9NZA1 410 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 HMGXB4Q9UGU5 601 aa7.4□□□□□ -1.22
VPS50-218ENST00000485994 NDRG2Q9UN36 371 aaKnown RBP7.4□□□□□ -1.22
VPS50-218ENST00000485994 GON4LQ3T8J9 2241 aa7.4□□□□□ -1.23
VPS50-218ENST00000485994 CFAP54Q96N23 3096 aa7.4□□□□□ -1.23
VPS50-218ENST00000485994 RALGAPA1Q6GYQ0 2036 aa7.39□□□□□ -1.23
VPS50-218ENST00000485994 TRIM49BA6NDI0 452 aa7.39□□□□□ -1.23
VPS50-218ENST00000485994 RNF223E7ERA6 249 aa7.39□□□□□ -1.23
VPS50-218ENST00000485994 COCHO43405 550 aa7.39□□□□□ -1.23
VPS50-218ENST00000485994 PAEPP09466 180 aa7.39□□□□□ -1.23
VPS50-218ENST00000485994 VDRP11473 427 aa7.39□□□□□ -1.23
VPS50-218ENST00000485994 CCDC130P13994 396 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms